Gene : Glyma.04G225000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31008//PTHR31008:SF5 - COP1-INTERACTING PROTEIN-RELATED Genomic Order:  2250
Name:  ? Glyma.04G225000 Secondary Identifier:  ? PAC:30487825
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G225000 0.5kb upstream 0.5kb upstream 10333 true Chr04: 49522568-49532900 Glycine max
Glyma.04G225000 0.5kb upstream 0.5kb upstream 500 false Chr04: 49522568-49523067 Glycine max
Glyma.04G225000 0.5kb downstream 0.5kb downstream 10333 true Chr04: 49523068-49533400 Glycine max
Glyma.04G225000 0.5kb downstream 0.5kb downstream 500 false Chr04: 49532901-49533400 Glycine max
Glyma.04G225000 1.0kb upstream 1.0kb upstream 10833 true Chr04: 49522068-49532900 Glycine max
Glyma.04G225000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 49522068-49523067 Glycine max
Glyma.04G225000 1.0kb downstream 1.0kb downstream 10833 true Chr04: 49523068-49533900 Glycine max
Glyma.04G225000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 49532901-49533900 Glycine max
Glyma.04G225000 2.0kb upstream 2.0kb upstream 11833 true Chr04: 49521068-49532900 Glycine max
Glyma.04G225000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 49521068-49523067 Glycine max
Glyma.04G225000 2.0kb downstream 2.0kb downstream 11833 true Chr04: 49523068-49534900 Glycine max
Glyma.04G225000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 49532901-49534900 Glycine max
Glyma.04G225000 5.0kb upstream 5.0kb upstream 14833 true Chr04: 49518068-49532900 Glycine max
Glyma.04G225000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 49518068-49523067 Glycine max
Glyma.04G225000 5.0kb downstream 5.0kb downstream 14833 true Chr04: 49523068-49537900 Glycine max
Glyma.04G225000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 49532901-49537900 Glycine max
Glyma.04G225000 10.0kb upstream 10.0kb upstream 19833 true Chr04: 49513068-49532900 Glycine max
Glyma.04G225000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 49513068-49523067 Glycine max
Glyma.04G225000 10.0kb downstream 10.0kb downstream 19833 true Chr04: 49523068-49542900 Glycine max
Glyma.04G225000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 49532901-49542900 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303099 5265 Fabidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.18526 0.0 11.2708    
cufflinks 6.45782 0.0 17.2287    
cufflinks 2.29536 0.0 6.44471   Low
cufflinks 5.79637 0.0 15.4696    
cufflinks 6.88025 0.0 18.3597   High
cufflinks 3.59699 0.0 9.76326    
cufflinks 4.1356 0.0 11.1508    
cufflinks 5.62802 0.0 15.0247    
cufflinks 4.54204 0.0 12.1915    
cufflinks 3.705        
cufflinks 0.239       Low
cufflinks 2.408        
cufflinks 3.878        
cufflinks 4.447        
cufflinks 0.678        
cufflinks 4.718        
cufflinks 0.507       Low
cufflinks 5.058        
cufflinks 4.27        
cufflinks 4.444        
cufflinks 0.603       Low
cufflinks 4.876        
cufflinks 4.331        
cufflinks 0.39       Low
cufflinks 4.532        
cufflinks 0.768        

0 Strain