Gene : Glyma.04G175400 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1754
Name:  ? Glyma.04G175400 Secondary Identifier:  ? PAC:30489321
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G175400 0.5kb upstream 0.5kb upstream 3986 true Chr04: 43855645-43859630 Glycine max
Glyma.04G175400 0.5kb upstream 0.5kb upstream 500 false Chr04: 43855645-43856144 Glycine max
Glyma.04G175400 0.5kb downstream 0.5kb downstream 3986 true Chr04: 43856145-43860130 Glycine max
Glyma.04G175400 0.5kb downstream 0.5kb downstream 500 false Chr04: 43859631-43860130 Glycine max
Glyma.04G175400 1.0kb upstream 1.0kb upstream 4486 true Chr04: 43855145-43859630 Glycine max
Glyma.04G175400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 43855145-43856144 Glycine max
Glyma.04G175400 1.0kb downstream 1.0kb downstream 4486 true Chr04: 43856145-43860630 Glycine max
Glyma.04G175400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 43859631-43860630 Glycine max
Glyma.04G175400 2.0kb upstream 2.0kb upstream 5486 true Chr04: 43854145-43859630 Glycine max
Glyma.04G175400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 43854145-43856144 Glycine max
Glyma.04G175400 2.0kb downstream 2.0kb downstream 5486 true Chr04: 43856145-43861630 Glycine max
Glyma.04G175400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 43859631-43861630 Glycine max
Glyma.04G175400 5.0kb upstream 5.0kb upstream 8486 true Chr04: 43851145-43859630 Glycine max
Glyma.04G175400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 43851145-43856144 Glycine max
Glyma.04G175400 5.0kb downstream 5.0kb downstream 8486 true Chr04: 43856145-43864630 Glycine max
Glyma.04G175400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 43859631-43864630 Glycine max
Glyma.04G175400 10.0kb upstream 10.0kb upstream 13486 true Chr04: 43846145-43859630 Glycine max
Glyma.04G175400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 43846145-43856144 Glycine max
Glyma.04G175400 10.0kb downstream 10.0kb downstream 13486 true Chr04: 43856145-43869630 Glycine max
Glyma.04G175400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 43859631-43869630 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303386 5265 Fabidae View MSA
124066157 5270 Rosid View MSA
123739123 5271 Pentapetalae View MSA
122794218 5272 Eudicot View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.52046 0.0 19.7247    
cufflinks 5.01798 0.0 18.3877    
cufflinks 3.56476 0.0 13.8602    
cufflinks 3.84588 0.0 14.7285    
cufflinks 5.64677 0.0 20.196   High
cufflinks 5.04503 0.0 18.2356    
cufflinks 2.02142 0.0 6.14115   Low
cufflinks 3.71663 0.0 14.4131    
cufflinks 2.95451 0.0 10.345    
cufflinks 1.494        
cufflinks 0.485       Low
cufflinks 1.684        
cufflinks 2.341        
cufflinks 2.969       High
cufflinks 0.186       Low
cufflinks 1.825        
cufflinks 1.199        
cufflinks 1.536        
cufflinks 2.689        
cufflinks 1.699        
cufflinks 0.284       Low
cufflinks 2.216        
cufflinks 2.627        
cufflinks 0.666        
cufflinks 1.485        
cufflinks 0.632        

0 Strain