Gene : Glyma.04G179500 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR23201//PTHR23201:SF18 - EXTENSIN, PROLINE-RICH PROTEIN Genomic Order:  1795
Name:  ? Glyma.04G179500 Secondary Identifier:  ? PAC:30487300
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G179500 0.5kb upstream 0.5kb upstream 1942 true Chr04: 44454037-44455978 Glycine max
Glyma.04G179500 0.5kb upstream 0.5kb upstream 500 false Chr04: 44454037-44454536 Glycine max
Glyma.04G179500 0.5kb downstream 0.5kb downstream 1942 true Chr04: 44454537-44456478 Glycine max
Glyma.04G179500 0.5kb downstream 0.5kb downstream 500 false Chr04: 44455979-44456478 Glycine max
Glyma.04G179500 1.0kb upstream 1.0kb upstream 2442 true Chr04: 44453537-44455978 Glycine max
Glyma.04G179500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 44453537-44454536 Glycine max
Glyma.04G179500 1.0kb downstream 1.0kb downstream 2442 true Chr04: 44454537-44456978 Glycine max
Glyma.04G179500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 44455979-44456978 Glycine max
Glyma.04G179500 2.0kb upstream 2.0kb upstream 3442 true Chr04: 44452537-44455978 Glycine max
Glyma.04G179500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 44452537-44454536 Glycine max
Glyma.04G179500 2.0kb downstream 2.0kb downstream 3442 true Chr04: 44454537-44457978 Glycine max
Glyma.04G179500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 44455979-44457978 Glycine max
Glyma.04G179500 5.0kb upstream 5.0kb upstream 6442 true Chr04: 44449537-44455978 Glycine max
Glyma.04G179500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 44449537-44454536 Glycine max
Glyma.04G179500 5.0kb downstream 5.0kb downstream 6442 true Chr04: 44454537-44460978 Glycine max
Glyma.04G179500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 44455979-44460978 Glycine max
Glyma.04G179500 10.0kb upstream 10.0kb upstream 11442 true Chr04: 44444537-44455978 Glycine max
Glyma.04G179500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 44444537-44454536 Glycine max
Glyma.04G179500 10.0kb downstream 10.0kb downstream 11442 true Chr04: 44454537-44465978 Glycine max
Glyma.04G179500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 44455979-44465978 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310487 5265 Fabidae View MSA
124073806 5270 Rosid View MSA
123751873 5271 Pentapetalae View MSA
122795637 5272 Eudicot View MSA
122051034 5273 Angiosperm View MSA
121312257 5274 Embryophyte View MSA
123349447 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.7518 0.0 66.6218    
cufflinks 154.76 0.0 546.967 High High
cufflinks 99.5586 0.0 303.791 High High
cufflinks 23.8708 0.0 73.369 High  
cufflinks 21.2395 0.0 67.3859 High  
cufflinks 3.02843 0.0 12.0936   Low
cufflinks 11.8128 0.0 42.5535    
cufflinks 72.3524 0.0 221.821 High  
cufflinks 31.4342 0.0 94.6418 High  
cufflinks 53.202     High  
cufflinks 0.053     Low Low
cufflinks 62.686     High  
cufflinks 1.988        
cufflinks 1.157        
cufflinks 3.126        
cufflinks 84.802     High High
cufflinks 1.149        
cufflinks 40.422     High  
cufflinks 59.183     High  
cufflinks 52.659     High  
cufflinks 0.153       Low
cufflinks 33.668     High  
cufflinks 49.542     High  
cufflinks 0.014     Low Low
cufflinks 32.717     High  
cufflinks 0.338        

0 Strain