Gene : Glyma.04G186800 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1868
Name:  ? Glyma.04G186800 Secondary Identifier:  ? PAC:30489550
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G186800 0.5kb upstream 0.5kb upstream 12013 true Chr04: 45691793-45703805 Glycine max
Glyma.04G186800 0.5kb upstream 0.5kb upstream 500 false Chr04: 45691793-45692292 Glycine max
Glyma.04G186800 0.5kb downstream 0.5kb downstream 12013 true Chr04: 45692293-45704305 Glycine max
Glyma.04G186800 0.5kb downstream 0.5kb downstream 500 false Chr04: 45703806-45704305 Glycine max
Glyma.04G186800 1.0kb upstream 1.0kb upstream 12513 true Chr04: 45691293-45703805 Glycine max
Glyma.04G186800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 45691293-45692292 Glycine max
Glyma.04G186800 1.0kb downstream 1.0kb downstream 12513 true Chr04: 45692293-45704805 Glycine max
Glyma.04G186800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 45703806-45704805 Glycine max
Glyma.04G186800 2.0kb upstream 2.0kb upstream 13513 true Chr04: 45690293-45703805 Glycine max
Glyma.04G186800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 45690293-45692292 Glycine max
Glyma.04G186800 2.0kb downstream 2.0kb downstream 13513 true Chr04: 45692293-45705805 Glycine max
Glyma.04G186800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 45703806-45705805 Glycine max
Glyma.04G186800 5.0kb upstream 5.0kb upstream 16513 true Chr04: 45687293-45703805 Glycine max
Glyma.04G186800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 45687293-45692292 Glycine max
Glyma.04G186800 5.0kb downstream 5.0kb downstream 16513 true Chr04: 45692293-45708805 Glycine max
Glyma.04G186800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 45703806-45708805 Glycine max
Glyma.04G186800 10.0kb upstream 10.0kb upstream 21513 true Chr04: 45682293-45703805 Glycine max
Glyma.04G186800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 45682293-45692292 Glycine max
Glyma.04G186800 10.0kb downstream 10.0kb downstream 21513 true Chr04: 45692293-45713805 Glycine max
Glyma.04G186800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 45703806-45713805 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248879 5265 Fabidae Singleton cluster - no MSA
124067104 5270 Rosid View MSA
123738274 5271 Pentapetalae View MSA
122790964 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.17132 0.0 4.03873   High
cufflinks 0.897143 0.0 3.16609    
cufflinks 0.817844 0.0 2.90001    
cufflinks 0.505146 0.0 1.85161    
cufflinks 0.699474 0.0 2.51569    
cufflinks 0.338233 0.0 1.26551   Low
cufflinks 0.553477 0.0 2.02067    
cufflinks 0.561687 0.0 2.0464    
cufflinks 0.941654 0.0 3.30948    
cufflinks 0.129        
cufflinks 0.113       Low
cufflinks 0.299       High
cufflinks 0.187        
cufflinks 0.312       High
cufflinks 0.206        
cufflinks 0.234        
cufflinks 0.111       Low
cufflinks 0.296       High
cufflinks 0.272        
cufflinks 0.213        
cufflinks 0.104       Low
cufflinks 0.227        
cufflinks 0.206        
cufflinks 0.13        
cufflinks 0.28        
cufflinks 0.107       Low

0 Strain