Gene : Glyma.04G197600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12300//PTHR12300:SF58 - HVA22-LIKE PROTEINS Genomic Order:  1976
Name:  ? Glyma.04G197600 Secondary Identifier:  ? PAC:30490184
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G197600 0.5kb upstream 0.5kb upstream 2037 true Chr04: 46971549-46973585 Glycine max
Glyma.04G197600 0.5kb upstream 0.5kb upstream 500 false Chr04: 46971549-46972048 Glycine max
Glyma.04G197600 0.5kb downstream 0.5kb downstream 2037 true Chr04: 46972049-46974085 Glycine max
Glyma.04G197600 0.5kb downstream 0.5kb downstream 500 false Chr04: 46973586-46974085 Glycine max
Glyma.04G197600 1.0kb upstream 1.0kb upstream 2537 true Chr04: 46971049-46973585 Glycine max
Glyma.04G197600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 46971049-46972048 Glycine max
Glyma.04G197600 1.0kb downstream 1.0kb downstream 2537 true Chr04: 46972049-46974585 Glycine max
Glyma.04G197600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 46973586-46974585 Glycine max
Glyma.04G197600 2.0kb upstream 2.0kb upstream 3537 true Chr04: 46970049-46973585 Glycine max
Glyma.04G197600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 46970049-46972048 Glycine max
Glyma.04G197600 2.0kb downstream 2.0kb downstream 3537 true Chr04: 46972049-46975585 Glycine max
Glyma.04G197600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 46973586-46975585 Glycine max
Glyma.04G197600 5.0kb upstream 5.0kb upstream 6537 true Chr04: 46967049-46973585 Glycine max
Glyma.04G197600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 46967049-46972048 Glycine max
Glyma.04G197600 5.0kb downstream 5.0kb downstream 6537 true Chr04: 46972049-46978585 Glycine max
Glyma.04G197600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 46973586-46978585 Glycine max
Glyma.04G197600 10.0kb upstream 10.0kb upstream 11537 true Chr04: 46962049-46973585 Glycine max
Glyma.04G197600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 46962049-46972048 Glycine max
Glyma.04G197600 10.0kb downstream 10.0kb downstream 11537 true Chr04: 46972049-46983585 Glycine max
Glyma.04G197600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 46973586-46983585 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312000 5265 Fabidae View MSA
124062938 5270 Rosid View MSA
123747497 5271 Pentapetalae View MSA
122794612 5272 Eudicot View MSA
122049450 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.318248 0.0 1.24634   Low
cufflinks 3.63745 0.0 12.3243    
cufflinks 4.73169 0.0 15.4552    
cufflinks 1.87353 0.0 6.72478    
cufflinks 5.27392 0.0 17.0426    
cufflinks 6.0144 0.0 19.1083    
cufflinks 0.578264 0.0 2.20769   Low
cufflinks 5.38964 0.0 17.3323    
cufflinks 3.35509 0.0 11.454    
cufflinks 10.364     High High
cufflinks 3.238        
cufflinks 3.751        
cufflinks 6.42        
cufflinks 6.328        
cufflinks 0.108       Low
cufflinks 4.333        
cufflinks 4.686        
cufflinks 4.06        
cufflinks 1.635        
cufflinks 4.796        
cufflinks 3.344        
cufflinks 5.603        
cufflinks 4.417        
cufflinks 1.649        
cufflinks 4.312        
cufflinks 4.857        

0 Strain