Gene : Glyma.19G166900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13763 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 Genomic Order:  1669
Name:  ? Glyma.19G166900 Secondary Identifier:  ? PAC:30512562
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G166900 0.5kb upstream 0.5kb upstream 7251 true Chr19: 42803477-42810727 Glycine max
Glyma.19G166900 0.5kb upstream 0.5kb upstream 500 false Chr19: 42803477-42803976 Glycine max
Glyma.19G166900 0.5kb downstream 0.5kb downstream 7251 true Chr19: 42803977-42811227 Glycine max
Glyma.19G166900 0.5kb downstream 0.5kb downstream 500 false Chr19: 42810728-42811227 Glycine max
Glyma.19G166900 1.0kb upstream 1.0kb upstream 7751 true Chr19: 42802977-42810727 Glycine max
Glyma.19G166900 1.0kb upstream 1.0kb upstream 1000 false Chr19: 42802977-42803976 Glycine max
Glyma.19G166900 1.0kb downstream 1.0kb downstream 7751 true Chr19: 42803977-42811727 Glycine max
Glyma.19G166900 1.0kb downstream 1.0kb downstream 1000 false Chr19: 42810728-42811727 Glycine max
Glyma.19G166900 2.0kb upstream 2.0kb upstream 8751 true Chr19: 42801977-42810727 Glycine max
Glyma.19G166900 2.0kb upstream 2.0kb upstream 2000 false Chr19: 42801977-42803976 Glycine max
Glyma.19G166900 2.0kb downstream 2.0kb downstream 8751 true Chr19: 42803977-42812727 Glycine max
Glyma.19G166900 2.0kb downstream 2.0kb downstream 2000 false Chr19: 42810728-42812727 Glycine max
Glyma.19G166900 5.0kb upstream 5.0kb upstream 11751 true Chr19: 42798977-42810727 Glycine max
Glyma.19G166900 5.0kb upstream 5.0kb upstream 5000 false Chr19: 42798977-42803976 Glycine max
Glyma.19G166900 5.0kb downstream 5.0kb downstream 11751 true Chr19: 42803977-42815727 Glycine max
Glyma.19G166900 5.0kb downstream 5.0kb downstream 5000 false Chr19: 42810728-42815727 Glycine max
Glyma.19G166900 10.0kb upstream 10.0kb upstream 16751 true Chr19: 42793977-42810727 Glycine max
Glyma.19G166900 10.0kb upstream 10.0kb upstream 10000 false Chr19: 42793977-42803976 Glycine max
Glyma.19G166900 10.0kb downstream 10.0kb downstream 16751 true Chr19: 42803977-42820727 Glycine max
Glyma.19G166900 10.0kb downstream 10.0kb downstream 10000 false Chr19: 42810728-42820727 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300162 5265 Fabidae View MSA
124074324 5270 Rosid View MSA
123745741 5271 Pentapetalae View MSA
122790490 5272 Eudicot View MSA
122049651 5273 Angiosperm View MSA
121346797 5274 Embryophyte View MSA
123380447 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.1851 0.0 57.0048    
cufflinks 13.9328 0.0 48.8979    
cufflinks 15.8319 0.0 55.3844    
cufflinks 8.98738 0.0 31.1141   Low
cufflinks 13.299 0.0 45.6043    
cufflinks 9.66691 0.0 33.4414   Low
cufflinks 8.5121 0.0 25.5248   Low
cufflinks 15.8147 0.0 55.0909    
cufflinks 20.3866 0.0 74.83 High High
cufflinks 0.731       Low
cufflinks 1.195        
cufflinks 2.098       High
cufflinks 0.822        
cufflinks 0.94        
cufflinks 2.04       High
cufflinks 1.001        
cufflinks 0.773       Low
cufflinks 1.585        
cufflinks 2.278       High
cufflinks 1.442        
cufflinks 0.879        
cufflinks 1.478        
cufflinks 1.649        
cufflinks 1.016        
cufflinks 1.269        
cufflinks 0.698       Low

0 Strain