Gene : Glyma.04G162500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22888 - CYTOCHROME C OXIDASE, SUBUNIT II Genomic Order:  1625
Name:  ? Glyma.04G162500 Secondary Identifier:  ? PAC:30490254
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3781 Glycine max pathologic  
Gmax PWY-7279 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G162500 0.5kb upstream 0.5kb upstream 971 true Chr04: 40265408-40266378 Glycine max
Glyma.04G162500 0.5kb upstream 0.5kb upstream 500 false Chr04: 40265408-40265907 Glycine max
Glyma.04G162500 0.5kb downstream 0.5kb downstream 971 true Chr04: 40265908-40266878 Glycine max
Glyma.04G162500 0.5kb downstream 0.5kb downstream 500 false Chr04: 40266379-40266878 Glycine max
Glyma.04G162500 1.0kb upstream 1.0kb upstream 1471 true Chr04: 40264908-40266378 Glycine max
Glyma.04G162500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 40264908-40265907 Glycine max
Glyma.04G162500 1.0kb downstream 1.0kb downstream 1471 true Chr04: 40265908-40267378 Glycine max
Glyma.04G162500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 40266379-40267378 Glycine max
Glyma.04G162500 2.0kb upstream 2.0kb upstream 2471 true Chr04: 40263908-40266378 Glycine max
Glyma.04G162500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 40263908-40265907 Glycine max
Glyma.04G162500 2.0kb downstream 2.0kb downstream 2471 true Chr04: 40265908-40268378 Glycine max
Glyma.04G162500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 40266379-40268378 Glycine max
Glyma.04G162500 5.0kb upstream 5.0kb upstream 5471 true Chr04: 40260908-40266378 Glycine max
Glyma.04G162500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 40260908-40265907 Glycine max
Glyma.04G162500 5.0kb downstream 5.0kb downstream 5471 true Chr04: 40265908-40271378 Glycine max
Glyma.04G162500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 40266379-40271378 Glycine max
Glyma.04G162500 10.0kb upstream 10.0kb upstream 10471 true Chr04: 40255908-40266378 Glycine max
Glyma.04G162500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 40255908-40265907 Glycine max
Glyma.04G162500 10.0kb downstream 10.0kb downstream 10471 true Chr04: 40265908-40276378 Glycine max
Glyma.04G162500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 40266379-40276378 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027311 5273 Angiosperm View MSA
122248786 5265 Fabidae Singleton cluster - no MSA
124070743 5270 Rosid View MSA
123743967 5271 Pentapetalae View MSA
122795698 5272 Eudicot View MSA
121348321 5274 Embryophyte View MSA
123428300 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0951883 0.0 0.430491 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.337918 0.0 1.38   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.172953 0.0 0.741193 Low  
cufflinks 0.243264 0.0 1.01577    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0883244 0.0 0.399491 Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.201       High
cufflinks 0.337       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.067     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain