Gene : Glyma.04G164400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR19305 - SYNAPTOSOMAL ASSOCIATED PROTEIN Genomic Order:  1644
Name:  ? Glyma.04G164400 Secondary Identifier:  ? PAC:30489627
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G164400 0.5kb upstream 0.5kb upstream 3044 true Chr04: 40972732-40975775 Glycine max
Glyma.04G164400 0.5kb upstream 0.5kb upstream 500 false Chr04: 40972732-40973231 Glycine max
Glyma.04G164400 0.5kb downstream 0.5kb downstream 3044 true Chr04: 40973232-40976275 Glycine max
Glyma.04G164400 0.5kb downstream 0.5kb downstream 500 false Chr04: 40975776-40976275 Glycine max
Glyma.04G164400 1.0kb upstream 1.0kb upstream 3544 true Chr04: 40972232-40975775 Glycine max
Glyma.04G164400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 40972232-40973231 Glycine max
Glyma.04G164400 1.0kb downstream 1.0kb downstream 3544 true Chr04: 40973232-40976775 Glycine max
Glyma.04G164400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 40975776-40976775 Glycine max
Glyma.04G164400 2.0kb upstream 2.0kb upstream 4544 true Chr04: 40971232-40975775 Glycine max
Glyma.04G164400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 40971232-40973231 Glycine max
Glyma.04G164400 2.0kb downstream 2.0kb downstream 4544 true Chr04: 40973232-40977775 Glycine max
Glyma.04G164400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 40975776-40977775 Glycine max
Glyma.04G164400 5.0kb upstream 5.0kb upstream 7544 true Chr04: 40968232-40975775 Glycine max
Glyma.04G164400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 40968232-40973231 Glycine max
Glyma.04G164400 5.0kb downstream 5.0kb downstream 7544 true Chr04: 40973232-40980775 Glycine max
Glyma.04G164400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 40975776-40980775 Glycine max
Glyma.04G164400 10.0kb upstream 10.0kb upstream 12544 true Chr04: 40963232-40975775 Glycine max
Glyma.04G164400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 40963232-40973231 Glycine max
Glyma.04G164400 10.0kb downstream 10.0kb downstream 12544 true Chr04: 40973232-40985775 Glycine max
Glyma.04G164400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 40975776-40985775 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297446 5265 Fabidae View MSA
124069233 5270 Rosid View MSA
123745951 5271 Pentapetalae View MSA
122796965 5272 Eudicot View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.2442 0.0 57.9446    
cufflinks 5.61852 0.0 20.6781    
cufflinks 9.60955 0.0 31.3585    
cufflinks 4.94451 0.0 24.1197    
cufflinks 11.6306 0.0 38.2839    
cufflinks 66.6918 0.0 222.217 High High
cufflinks 5.51121 0.0 24.5788    
cufflinks 8.90251 0.0 30.1266    
cufflinks 11.2799 0.0 36.4157    
cufflinks 14.45     High  
cufflinks 45.839     High High
cufflinks 6.196        
cufflinks 8.889     High  
cufflinks 1.298       Low
cufflinks 19.064     High  
cufflinks 4.739        
cufflinks 59.373     High High
cufflinks 4.737        
cufflinks 3.358        
cufflinks 3.298        
cufflinks 23.616     High  
cufflinks 3.869        
cufflinks 6.281        
cufflinks 34.72     High High
cufflinks 3.626        
cufflinks 48.716     High High

0 Strain