Gene : Glyma.04G099400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11778:SF0 - SERINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  994
Name:  ? Glyma.04G099400 Secondary Identifier:  ? PAC:30489014
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G099400 0.5kb upstream 0.5kb upstream 4864 true Chr04: 9072533-9077396 Glycine max
Glyma.04G099400 0.5kb upstream 0.5kb upstream 500 false Chr04: 9076897-9077396 Glycine max
Glyma.04G099400 0.5kb downstream 0.5kb downstream 4864 true Chr04: 9072033-9076896 Glycine max
Glyma.04G099400 0.5kb downstream 0.5kb downstream 500 false Chr04: 9072033-9072532 Glycine max
Glyma.04G099400 1.0kb upstream 1.0kb upstream 5364 true Chr04: 9072533-9077896 Glycine max
Glyma.04G099400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 9076897-9077896 Glycine max
Glyma.04G099400 1.0kb downstream 1.0kb downstream 5364 true Chr04: 9071533-9076896 Glycine max
Glyma.04G099400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 9071533-9072532 Glycine max
Glyma.04G099400 2.0kb upstream 2.0kb upstream 6364 true Chr04: 9072533-9078896 Glycine max
Glyma.04G099400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 9076897-9078896 Glycine max
Glyma.04G099400 2.0kb downstream 2.0kb downstream 6364 true Chr04: 9070533-9076896 Glycine max
Glyma.04G099400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 9070533-9072532 Glycine max
Glyma.04G099400 5.0kb upstream 5.0kb upstream 9364 true Chr04: 9072533-9081896 Glycine max
Glyma.04G099400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 9076897-9081896 Glycine max
Glyma.04G099400 5.0kb downstream 5.0kb downstream 9364 true Chr04: 9067533-9076896 Glycine max
Glyma.04G099400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 9067533-9072532 Glycine max
Glyma.04G099400 10.0kb upstream 10.0kb upstream 14364 true Chr04: 9072533-9086896 Glycine max
Glyma.04G099400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 9076897-9086896 Glycine max
Glyma.04G099400 10.0kb downstream 10.0kb downstream 14364 true Chr04: 9062533-9076896 Glycine max
Glyma.04G099400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 9062533-9072532 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301777 5265 Fabidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7603 0.0 56.1262   High
cufflinks 10.1124 0.0 35.6295    
cufflinks 9.89473 0.0 44.4619    
cufflinks 5.63083 0.0 21.9759    
cufflinks 4.09616 0.0 17.6207    
cufflinks 1.95932 0.0 11.5908   Low
cufflinks 4.24587 0.0 21.4102    
cufflinks 5.4733 0.0 21.6034    
cufflinks 3.28139 0.0 15.8852    
cufflinks 0.902        
cufflinks 0.201       Low
cufflinks 1.605        
cufflinks 0.412        
cufflinks 0.588        
cufflinks 0.46        
cufflinks 2.5       High
cufflinks 0.208       Low
cufflinks 1.43        
cufflinks 1.59        
cufflinks 3.243       High
cufflinks 0.201       Low
cufflinks 3.052       High
cufflinks 3.049       High
cufflinks 0.257        
cufflinks 2.814       High
cufflinks 0.135       Low

0 Strain