Gene : Glyma.04G107100 G. max Wm82.a2.v1
Defline:  (1 of 31) KOG0978 - E3 ubiquitin ligase involved in syntaxin degradation Genomic Order:  1071
Name:  ? Glyma.04G107100 Secondary Identifier:  ? PAC:30489408
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G107100 0.5kb upstream 0.5kb upstream 12168 true Chr04: 11239281-11251448 Glycine max
Glyma.04G107100 0.5kb upstream 0.5kb upstream 500 false Chr04: 11250949-11251448 Glycine max
Glyma.04G107100 0.5kb downstream 0.5kb downstream 12168 true Chr04: 11238781-11250948 Glycine max
Glyma.04G107100 0.5kb downstream 0.5kb downstream 500 false Chr04: 11238781-11239280 Glycine max
Glyma.04G107100 1.0kb upstream 1.0kb upstream 12668 true Chr04: 11239281-11251948 Glycine max
Glyma.04G107100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 11250949-11251948 Glycine max
Glyma.04G107100 1.0kb downstream 1.0kb downstream 12668 true Chr04: 11238281-11250948 Glycine max
Glyma.04G107100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 11238281-11239280 Glycine max
Glyma.04G107100 2.0kb upstream 2.0kb upstream 13668 true Chr04: 11239281-11252948 Glycine max
Glyma.04G107100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 11250949-11252948 Glycine max
Glyma.04G107100 2.0kb downstream 2.0kb downstream 13668 true Chr04: 11237281-11250948 Glycine max
Glyma.04G107100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 11237281-11239280 Glycine max
Glyma.04G107100 5.0kb upstream 5.0kb upstream 16668 true Chr04: 11239281-11255948 Glycine max
Glyma.04G107100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 11250949-11255948 Glycine max
Glyma.04G107100 5.0kb downstream 5.0kb downstream 16668 true Chr04: 11234281-11250948 Glycine max
Glyma.04G107100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 11234281-11239280 Glycine max
Glyma.04G107100 10.0kb upstream 10.0kb upstream 21668 true Chr04: 11239281-11260948 Glycine max
Glyma.04G107100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 11250949-11260948 Glycine max
Glyma.04G107100 10.0kb downstream 10.0kb downstream 21668 true Chr04: 11229281-11250948 Glycine max
Glyma.04G107100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 11229281-11239280 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311061 5265 Fabidae View MSA
124073951 5270 Rosid View MSA
123751263 5271 Pentapetalae View MSA
122794773 5272 Eudicot View MSA
122048313 5273 Angiosperm View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.6476 0.0 5.25988   Low
cufflinks 4.43423 0.0 13.2794    
cufflinks 1.55696 0.0 4.97649   Low
cufflinks 6.90083 0.0 24.9802   High
cufflinks 3.35426 0.0 11.4822    
cufflinks 1.75369 0.0 5.52029   Low
cufflinks 7.5903 0.0 27.6572   High
cufflinks 4.36538 0.0 15.0862    
cufflinks 3.28349 0.0 11.2843    
cufflinks 2.093        
cufflinks 0.119       Low
cufflinks 1.077        
cufflinks 1.831        
cufflinks 1.925        
cufflinks 0.25       Low
cufflinks 2.334        
cufflinks 0.217       Low
cufflinks 2.637        
cufflinks 2.141        
cufflinks 2.068        
cufflinks 0.285       Low
cufflinks 2.283        
cufflinks 1.964        
cufflinks 0.154       Low
cufflinks 2.332        
cufflinks 0.337        

0 Strain