Gene : Glyma.04G123500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13900 - TRANSCRIPTION INITIATION FACTOR TFIID Genomic Order:  1235
Name:  ? Glyma.04G123500 Secondary Identifier:  ? PAC:30490216
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G123500 0.5kb upstream 0.5kb upstream 42514 true Chr04: 15945209-15987722 Glycine max
Glyma.04G123500 0.5kb upstream 0.5kb upstream 500 false Chr04: 15945209-15945708 Glycine max
Glyma.04G123500 0.5kb downstream 0.5kb downstream 42514 true Chr04: 15945709-15988222 Glycine max
Glyma.04G123500 0.5kb downstream 0.5kb downstream 500 false Chr04: 15987723-15988222 Glycine max
Glyma.04G123500 1.0kb upstream 1.0kb upstream 43014 true Chr04: 15944709-15987722 Glycine max
Glyma.04G123500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 15944709-15945708 Glycine max
Glyma.04G123500 1.0kb downstream 1.0kb downstream 43014 true Chr04: 15945709-15988722 Glycine max
Glyma.04G123500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 15987723-15988722 Glycine max
Glyma.04G123500 2.0kb upstream 2.0kb upstream 44014 true Chr04: 15943709-15987722 Glycine max
Glyma.04G123500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 15943709-15945708 Glycine max
Glyma.04G123500 2.0kb downstream 2.0kb downstream 44014 true Chr04: 15945709-15989722 Glycine max
Glyma.04G123500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 15987723-15989722 Glycine max
Glyma.04G123500 5.0kb upstream 5.0kb upstream 47014 true Chr04: 15940709-15987722 Glycine max
Glyma.04G123500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 15940709-15945708 Glycine max
Glyma.04G123500 5.0kb downstream 5.0kb downstream 47014 true Chr04: 15945709-15992722 Glycine max
Glyma.04G123500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 15987723-15992722 Glycine max
Glyma.04G123500 10.0kb upstream 10.0kb upstream 52014 true Chr04: 15935709-15987722 Glycine max
Glyma.04G123500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 15935709-15945708 Glycine max
Glyma.04G123500 10.0kb downstream 10.0kb downstream 52014 true Chr04: 15945709-15997722 Glycine max
Glyma.04G123500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 15987723-15997722 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302609 5265 Fabidae View MSA
124067609 5270 Rosid View MSA
123748970 5271 Pentapetalae View MSA
122794337 5272 Eudicot View MSA
122046359 5273 Angiosperm View MSA
121347140 5274 Embryophyte View MSA
123423919 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.34496 0.0 22.9443   High
cufflinks 6.02888 0.0 21.0817    
cufflinks 7.06036 0.0 25.167   High
cufflinks 5.25904 0.0 18.3911    
cufflinks 3.41821 0.0 10.4079   Low
cufflinks 3.28278 0.0 10.4511   Low
cufflinks 4.45973 0.0 15.4905    
cufflinks 4.1046 0.0 14.2477    
cufflinks 3.92973 0.0 11.8845    
cufflinks 0.534        
cufflinks 0.505        
cufflinks 0.832        
cufflinks 0.42       Low
cufflinks 0.378       Low
cufflinks 0.484        
cufflinks 0.793        
cufflinks 0.339       Low
cufflinks 0.84        
cufflinks 0.795        
cufflinks 0.925       High
cufflinks 0.451        
cufflinks 0.886       High
cufflinks 0.727        
cufflinks 0.461        
cufflinks 0.838        
cufflinks 0.576        

0 Strain