Gene : Glyma.19G204500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  2045
Name:  ? Glyma.19G204500 Secondary Identifier:  ? PAC:30514236
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G204500 0.5kb upstream 0.5kb upstream 5985 true Chr19: 46069891-46075875 Glycine max
Glyma.19G204500 0.5kb upstream 0.5kb upstream 500 false Chr19: 46075376-46075875 Glycine max
Glyma.19G204500 0.5kb downstream 0.5kb downstream 5985 true Chr19: 46069391-46075375 Glycine max
Glyma.19G204500 0.5kb downstream 0.5kb downstream 500 false Chr19: 46069391-46069890 Glycine max
Glyma.19G204500 1.0kb upstream 1.0kb upstream 6485 true Chr19: 46069891-46076375 Glycine max
Glyma.19G204500 1.0kb upstream 1.0kb upstream 1000 false Chr19: 46075376-46076375 Glycine max
Glyma.19G204500 1.0kb downstream 1.0kb downstream 6485 true Chr19: 46068891-46075375 Glycine max
Glyma.19G204500 1.0kb downstream 1.0kb downstream 1000 false Chr19: 46068891-46069890 Glycine max
Glyma.19G204500 2.0kb upstream 2.0kb upstream 7485 true Chr19: 46069891-46077375 Glycine max
Glyma.19G204500 2.0kb upstream 2.0kb upstream 2000 false Chr19: 46075376-46077375 Glycine max
Glyma.19G204500 2.0kb downstream 2.0kb downstream 7485 true Chr19: 46067891-46075375 Glycine max
Glyma.19G204500 2.0kb downstream 2.0kb downstream 2000 false Chr19: 46067891-46069890 Glycine max
Glyma.19G204500 5.0kb upstream 5.0kb upstream 10485 true Chr19: 46069891-46080375 Glycine max
Glyma.19G204500 5.0kb upstream 5.0kb upstream 5000 false Chr19: 46075376-46080375 Glycine max
Glyma.19G204500 5.0kb downstream 5.0kb downstream 10485 true Chr19: 46064891-46075375 Glycine max
Glyma.19G204500 5.0kb downstream 5.0kb downstream 5000 false Chr19: 46064891-46069890 Glycine max
Glyma.19G204500 10.0kb upstream 10.0kb upstream 15485 true Chr19: 46069891-46085375 Glycine max
Glyma.19G204500 10.0kb upstream 10.0kb upstream 10000 false Chr19: 46075376-46085375 Glycine max
Glyma.19G204500 10.0kb downstream 10.0kb downstream 15485 true Chr19: 46059891-46075375 Glycine max
Glyma.19G204500 10.0kb downstream 10.0kb downstream 10000 false Chr19: 46059891-46069890 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309105 5265 Fabidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.2015 0.0 53.944   High
cufflinks 10.4427 0.0 28.7427    
cufflinks 23.6722 0.0 63.1624 High High
cufflinks 11.9184 0.0 32.473    
cufflinks 13.8975 0.0 37.5518    
cufflinks 13.5367 0.0 36.6022    
cufflinks 8.74542 0.0 24.4454   Low
cufflinks 14.8478 0.0 39.9697    
cufflinks 14.5833 0.0 39.2774    
cufflinks 5.079        
cufflinks 20.033     High High
cufflinks 5.096        
cufflinks 2.514        
cufflinks 2.426        
cufflinks 15.182     High High
cufflinks 2.493        
cufflinks 26.213     High High
cufflinks 4.554        
cufflinks 3.464        
cufflinks 2.508        
cufflinks 19.616     High High
cufflinks 3.055        
cufflinks 3.052        
cufflinks 15.309     High High
cufflinks 2.588        
cufflinks 19.901     High High

0 Strain