Gene : Glyma.19G205700 G. max Wm82.a2.v1
Defline:  (1 of 11) KOG0144 - RNA-binding protein CUGBP1/BRUNO (RRM superfamily) Genomic Order:  2057
Name:  ? Glyma.19G205700 Secondary Identifier:  ? PAC:30512338
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G205700 0.5kb upstream 0.5kb upstream 5262 true Chr19: 46145146-46150407 Glycine max
Glyma.19G205700 0.5kb upstream 0.5kb upstream 500 false Chr19: 46149908-46150407 Glycine max
Glyma.19G205700 0.5kb downstream 0.5kb downstream 5262 true Chr19: 46144646-46149907 Glycine max
Glyma.19G205700 0.5kb downstream 0.5kb downstream 500 false Chr19: 46144646-46145145 Glycine max
Glyma.19G205700 1.0kb upstream 1.0kb upstream 5762 true Chr19: 46145146-46150907 Glycine max
Glyma.19G205700 1.0kb upstream 1.0kb upstream 1000 false Chr19: 46149908-46150907 Glycine max
Glyma.19G205700 1.0kb downstream 1.0kb downstream 5762 true Chr19: 46144146-46149907 Glycine max
Glyma.19G205700 1.0kb downstream 1.0kb downstream 1000 false Chr19: 46144146-46145145 Glycine max
Glyma.19G205700 2.0kb upstream 2.0kb upstream 6762 true Chr19: 46145146-46151907 Glycine max
Glyma.19G205700 2.0kb upstream 2.0kb upstream 2000 false Chr19: 46149908-46151907 Glycine max
Glyma.19G205700 2.0kb downstream 2.0kb downstream 6762 true Chr19: 46143146-46149907 Glycine max
Glyma.19G205700 2.0kb downstream 2.0kb downstream 2000 false Chr19: 46143146-46145145 Glycine max
Glyma.19G205700 5.0kb upstream 5.0kb upstream 9762 true Chr19: 46145146-46154907 Glycine max
Glyma.19G205700 5.0kb upstream 5.0kb upstream 5000 false Chr19: 46149908-46154907 Glycine max
Glyma.19G205700 5.0kb downstream 5.0kb downstream 9762 true Chr19: 46140146-46149907 Glycine max
Glyma.19G205700 5.0kb downstream 5.0kb downstream 5000 false Chr19: 46140146-46145145 Glycine max
Glyma.19G205700 10.0kb upstream 10.0kb upstream 14762 true Chr19: 46145146-46159907 Glycine max
Glyma.19G205700 10.0kb upstream 10.0kb upstream 10000 false Chr19: 46149908-46159907 Glycine max
Glyma.19G205700 10.0kb downstream 10.0kb downstream 14762 true Chr19: 46135146-46149907 Glycine max
Glyma.19G205700 10.0kb downstream 10.0kb downstream 10000 false Chr19: 46135146-46145145 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247867 5265 Fabidae Singleton cluster - no MSA
123991554 5270 Rosid Singleton cluster - no MSA
123566497 5271 Pentapetalae Singleton cluster - no MSA
122601255 5272 Eudicot Singleton cluster - no MSA
122044702 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349683 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.9291 0.0 24.8179    
cufflinks 8.09614 0.0 26.5665    
cufflinks 3.36996 0.0 14.4603   Low
cufflinks 3.55118 0.0 11.0734   Low
cufflinks 11.353 0.0 41.5622    
cufflinks 25.0662 0.0 87.8027 High High
cufflinks 4.04338 0.0 12.2847    
cufflinks 8.49545 0.0 33.2827    
cufflinks 9.98347 0.0 37.306    
cufflinks 2.255        
cufflinks 0.846       Low
cufflinks 0.939       Low
cufflinks 3.023       High
cufflinks 3.692       High
cufflinks 1.231        
cufflinks 3.092       High
cufflinks 1.377        
cufflinks 0.97       Low
cufflinks 1.573        
cufflinks 2.619        
cufflinks 1.566        
cufflinks 2.356        
cufflinks 2.403        
cufflinks 0.946       Low
cufflinks 2.149        
cufflinks 1.753        

0 Strain