Gene : Glyma.19G195200 G. max Wm82.a2.v1
Defline:  (1 of 252) PF02519 - Auxin responsive protein (Auxin_inducible) Genomic Order:  1952
Name:  ? Glyma.19G195200 Secondary Identifier:  ? PAC:30515092
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G195200 0.5kb upstream 0.5kb upstream 1832 true Chr19: 45248920-45250751 Glycine max
Glyma.19G195200 0.5kb upstream 0.5kb upstream 500 false Chr19: 45248920-45249419 Glycine max
Glyma.19G195200 0.5kb downstream 0.5kb downstream 1832 true Chr19: 45249420-45251251 Glycine max
Glyma.19G195200 0.5kb downstream 0.5kb downstream 500 false Chr19: 45250752-45251251 Glycine max
Glyma.19G195200 1.0kb upstream 1.0kb upstream 2332 true Chr19: 45248420-45250751 Glycine max
Glyma.19G195200 1.0kb upstream 1.0kb upstream 1000 false Chr19: 45248420-45249419 Glycine max
Glyma.19G195200 1.0kb downstream 1.0kb downstream 2332 true Chr19: 45249420-45251751 Glycine max
Glyma.19G195200 1.0kb downstream 1.0kb downstream 1000 false Chr19: 45250752-45251751 Glycine max
Glyma.19G195200 2.0kb upstream 2.0kb upstream 3332 true Chr19: 45247420-45250751 Glycine max
Glyma.19G195200 2.0kb upstream 2.0kb upstream 2000 false Chr19: 45247420-45249419 Glycine max
Glyma.19G195200 2.0kb downstream 2.0kb downstream 3332 true Chr19: 45249420-45252751 Glycine max
Glyma.19G195200 2.0kb downstream 2.0kb downstream 2000 false Chr19: 45250752-45252751 Glycine max
Glyma.19G195200 5.0kb upstream 5.0kb upstream 6332 true Chr19: 45244420-45250751 Glycine max
Glyma.19G195200 5.0kb upstream 5.0kb upstream 5000 false Chr19: 45244420-45249419 Glycine max
Glyma.19G195200 5.0kb downstream 5.0kb downstream 6332 true Chr19: 45249420-45255751 Glycine max
Glyma.19G195200 5.0kb downstream 5.0kb downstream 5000 false Chr19: 45250752-45255751 Glycine max
Glyma.19G195200 10.0kb upstream 10.0kb upstream 11332 true Chr19: 45239420-45250751 Glycine max
Glyma.19G195200 10.0kb upstream 10.0kb upstream 10000 false Chr19: 45239420-45249419 Glycine max
Glyma.19G195200 10.0kb downstream 10.0kb downstream 11332 true Chr19: 45249420-45260751 Glycine max
Glyma.19G195200 10.0kb downstream 10.0kb downstream 10000 false Chr19: 45250752-45260751 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298890 5265 Fabidae View MSA
124068119 5270 Rosid View MSA
123749819 5271 Pentapetalae View MSA
122788630 5272 Eudicot View MSA
122051602 5273 Angiosperm View MSA
121351344 5274 Embryophyte View MSA
123382129 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.22281 0.0 4.40002    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0456927 0.0 0.191275 Low Low
cufflinks 0.0606611 0.0 0.249815 Low Low
cufflinks 0.340808 0.0 1.30812    
cufflinks 2.29906 0.0 7.84028   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.52479 0.0 5.38932    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.087        
cufflinks 0.057     Low  
cufflinks 0.506       High
cufflinks 0.1        
cufflinks 0.072        
cufflinks 0.012     Low Low
cufflinks 0.08        
cufflinks 0.008     Low Low
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.066        
cufflinks 0.072     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.36       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  

0 Strain