Gene : Glyma.19G197600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT Genomic Order:  1976
Name:  ? Glyma.19G197600 Secondary Identifier:  ? PAC:30513850
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G197600 0.5kb upstream 0.5kb upstream 1808 true Chr19: 45483453-45485260 Glycine max
Glyma.19G197600 0.5kb upstream 0.5kb upstream 500 false Chr19: 45483453-45483952 Glycine max
Glyma.19G197600 0.5kb downstream 0.5kb downstream 1808 true Chr19: 45483953-45485760 Glycine max
Glyma.19G197600 0.5kb downstream 0.5kb downstream 500 false Chr19: 45485261-45485760 Glycine max
Glyma.19G197600 1.0kb upstream 1.0kb upstream 2308 true Chr19: 45482953-45485260 Glycine max
Glyma.19G197600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 45482953-45483952 Glycine max
Glyma.19G197600 1.0kb downstream 1.0kb downstream 2308 true Chr19: 45483953-45486260 Glycine max
Glyma.19G197600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 45485261-45486260 Glycine max
Glyma.19G197600 2.0kb upstream 2.0kb upstream 3308 true Chr19: 45481953-45485260 Glycine max
Glyma.19G197600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 45481953-45483952 Glycine max
Glyma.19G197600 2.0kb downstream 2.0kb downstream 3308 true Chr19: 45483953-45487260 Glycine max
Glyma.19G197600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 45485261-45487260 Glycine max
Glyma.19G197600 5.0kb upstream 5.0kb upstream 6308 true Chr19: 45478953-45485260 Glycine max
Glyma.19G197600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 45478953-45483952 Glycine max
Glyma.19G197600 5.0kb downstream 5.0kb downstream 6308 true Chr19: 45483953-45490260 Glycine max
Glyma.19G197600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 45485261-45490260 Glycine max
Glyma.19G197600 10.0kb upstream 10.0kb upstream 11308 true Chr19: 45473953-45485260 Glycine max
Glyma.19G197600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 45473953-45483952 Glycine max
Glyma.19G197600 10.0kb downstream 10.0kb downstream 11308 true Chr19: 45483953-45495260 Glycine max
Glyma.19G197600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 45485261-45495260 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121785019 5273 Angiosperm View MSA
122308675 5265 Fabidae View MSA
124037425 5270 Rosid View MSA
123757237 5271 Pentapetalae View MSA
122778306 5272 Eudicot View MSA
121056420 5274 Embryophyte View MSA
123096330 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.83203 0.0 17.5846    
cufflinks 4.99852 0.0 15.4269   Low
cufflinks 8.01198 0.0 23.3534   High
cufflinks 6.5891 0.0 19.6139    
cufflinks 6.61419 0.0 19.5014    
cufflinks 5.84147 0.0 17.5772    
cufflinks 6.54377 0.0 19.3989    
cufflinks 6.67241 0.0 19.7743    
cufflinks 4.8106 0.0 14.8777   Low
cufflinks 5.509        
cufflinks 10.726     High High
cufflinks 4.898        
cufflinks 2.868       Low
cufflinks 3.711        
cufflinks 7.909     High High
cufflinks 3.719        
cufflinks 6.843     High High
cufflinks 4.045        
cufflinks 2.787       Low
cufflinks 3.651        
cufflinks 5.207        
cufflinks 3.247        
cufflinks 2.49       Low
cufflinks 6.184     High  
cufflinks 3.399        
cufflinks 6.485     High  

0 Strain