Gene : Glyma.19G199000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31852:SF28 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  1990
Name:  ? Glyma.19G199000 Secondary Identifier:  ? PAC:30511845
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G199000 0.5kb upstream 0.5kb upstream 1806 true Chr19: 45610443-45612248 Glycine max
Glyma.19G199000 0.5kb upstream 0.5kb upstream 500 false Chr19: 45611749-45612248 Glycine max
Glyma.19G199000 0.5kb downstream 0.5kb downstream 1806 true Chr19: 45609943-45611748 Glycine max
Glyma.19G199000 0.5kb downstream 0.5kb downstream 500 false Chr19: 45609943-45610442 Glycine max
Glyma.19G199000 1.0kb upstream 1.0kb upstream 2306 true Chr19: 45610443-45612748 Glycine max
Glyma.19G199000 1.0kb upstream 1.0kb upstream 1000 false Chr19: 45611749-45612748 Glycine max
Glyma.19G199000 1.0kb downstream 1.0kb downstream 2306 true Chr19: 45609443-45611748 Glycine max
Glyma.19G199000 1.0kb downstream 1.0kb downstream 1000 false Chr19: 45609443-45610442 Glycine max
Glyma.19G199000 2.0kb upstream 2.0kb upstream 3306 true Chr19: 45610443-45613748 Glycine max
Glyma.19G199000 2.0kb upstream 2.0kb upstream 2000 false Chr19: 45611749-45613748 Glycine max
Glyma.19G199000 2.0kb downstream 2.0kb downstream 3306 true Chr19: 45608443-45611748 Glycine max
Glyma.19G199000 2.0kb downstream 2.0kb downstream 2000 false Chr19: 45608443-45610442 Glycine max
Glyma.19G199000 5.0kb upstream 5.0kb upstream 6306 true Chr19: 45610443-45616748 Glycine max
Glyma.19G199000 5.0kb upstream 5.0kb upstream 5000 false Chr19: 45611749-45616748 Glycine max
Glyma.19G199000 5.0kb downstream 5.0kb downstream 6306 true Chr19: 45605443-45611748 Glycine max
Glyma.19G199000 5.0kb downstream 5.0kb downstream 5000 false Chr19: 45605443-45610442 Glycine max
Glyma.19G199000 10.0kb upstream 10.0kb upstream 11306 true Chr19: 45610443-45621748 Glycine max
Glyma.19G199000 10.0kb upstream 10.0kb upstream 10000 false Chr19: 45611749-45621748 Glycine max
Glyma.19G199000 10.0kb downstream 10.0kb downstream 11306 true Chr19: 45600443-45611748 Glycine max
Glyma.19G199000 10.0kb downstream 10.0kb downstream 10000 false Chr19: 45600443-45610442 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311671 5265 Fabidae View MSA
124050487 5270 Rosid View MSA
123741970 5271 Pentapetalae View MSA
122797566 5272 Eudicot View MSA
122045519 5273 Angiosperm View MSA
121310460 5274 Embryophyte View MSA
123347936 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 13.3772 0.0 37.1236   High
cufflinks 0.0118562 0.0 0.057005 Low  
cufflinks 0.0553456 0.0 0.231613 Low  
cufflinks 0.040385 0.0 0.173071 Low  
cufflinks 0.0755492 0.0 0.309907 Low  
cufflinks 0.0867663 0.0 0.353611 Low  
cufflinks 0.0655826 0.0 0.271474 Low  
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.136       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.842       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain