Gene : Glyma.19G198900 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR31415:SF2 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Genomic Order:  1989
Name:  ? Glyma.19G198900 Secondary Identifier:  ? PAC:30512972
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G198900 0.5kb upstream 0.5kb upstream 1956 true Chr19: 45588629-45590584 Glycine max
Glyma.19G198900 0.5kb upstream 0.5kb upstream 500 false Chr19: 45590085-45590584 Glycine max
Glyma.19G198900 0.5kb downstream 0.5kb downstream 1956 true Chr19: 45588129-45590084 Glycine max
Glyma.19G198900 0.5kb downstream 0.5kb downstream 500 false Chr19: 45588129-45588628 Glycine max
Glyma.19G198900 1.0kb upstream 1.0kb upstream 2456 true Chr19: 45588629-45591084 Glycine max
Glyma.19G198900 1.0kb upstream 1.0kb upstream 1000 false Chr19: 45590085-45591084 Glycine max
Glyma.19G198900 1.0kb downstream 1.0kb downstream 2456 true Chr19: 45587629-45590084 Glycine max
Glyma.19G198900 1.0kb downstream 1.0kb downstream 1000 false Chr19: 45587629-45588628 Glycine max
Glyma.19G198900 2.0kb upstream 2.0kb upstream 3456 true Chr19: 45588629-45592084 Glycine max
Glyma.19G198900 2.0kb upstream 2.0kb upstream 2000 false Chr19: 45590085-45592084 Glycine max
Glyma.19G198900 2.0kb downstream 2.0kb downstream 3456 true Chr19: 45586629-45590084 Glycine max
Glyma.19G198900 2.0kb downstream 2.0kb downstream 2000 false Chr19: 45586629-45588628 Glycine max
Glyma.19G198900 5.0kb upstream 5.0kb upstream 6456 true Chr19: 45588629-45595084 Glycine max
Glyma.19G198900 5.0kb upstream 5.0kb upstream 5000 false Chr19: 45590085-45595084 Glycine max
Glyma.19G198900 5.0kb downstream 5.0kb downstream 6456 true Chr19: 45583629-45590084 Glycine max
Glyma.19G198900 5.0kb downstream 5.0kb downstream 5000 false Chr19: 45583629-45588628 Glycine max
Glyma.19G198900 10.0kb upstream 10.0kb upstream 11456 true Chr19: 45588629-45600084 Glycine max
Glyma.19G198900 10.0kb upstream 10.0kb upstream 10000 false Chr19: 45590085-45600084 Glycine max
Glyma.19G198900 10.0kb downstream 10.0kb downstream 11456 true Chr19: 45578629-45590084 Glycine max
Glyma.19G198900 10.0kb downstream 10.0kb downstream 10000 false Chr19: 45578629-45588628 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307613 5265 Fabidae View MSA
124060633 5270 Rosid View MSA
123748303 5271 Pentapetalae View MSA
122796873 5272 Eudicot View MSA
122050146 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.2328 0.0 39.0858   Low
cufflinks 34.2785 0.0 91.528 High  
cufflinks 79.4235 0.0 222.455 High  
cufflinks 55.6941 0.0 151.557 High  
cufflinks 70.1768 0.0 194.796 High  
cufflinks 87.3987 0.0 248.399 High High
cufflinks 13.9997 0.0 38.4826   Low
cufflinks 30.3515 0.0 80.9747 High  
cufflinks 64.4027 0.0 177.493 High  
cufflinks 26.384     High  
cufflinks 25.812     High  
cufflinks 32.486     High  
cufflinks 73.823     High High
cufflinks 23.951     High  
cufflinks 16.222     High  
cufflinks 9.262     High Low
cufflinks 23.891     High  
cufflinks 18.638     High  
cufflinks 29.572     High  
cufflinks 4.474       Low
cufflinks 21.436     High  
cufflinks 8.584     High Low
cufflinks 12.375     High  
cufflinks 44.977     High High
cufflinks 6.799       Low
cufflinks 33.947     High  

0 Strain