Gene : Glyma.19G178800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11652:SF16 - 40S RIBOSOMAL PROTEIN S23-1 Genomic Order:  1788
Name:  ? Glyma.19G178800 Secondary Identifier:  ? PAC:30511230
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G178800 0.5kb upstream 0.5kb upstream 2419 true Chr19: 43797832-43800250 Glycine max
Glyma.19G178800 0.5kb upstream 0.5kb upstream 500 false Chr19: 43799751-43800250 Glycine max
Glyma.19G178800 0.5kb downstream 0.5kb downstream 2419 true Chr19: 43797332-43799750 Glycine max
Glyma.19G178800 0.5kb downstream 0.5kb downstream 500 false Chr19: 43797332-43797831 Glycine max
Glyma.19G178800 1.0kb upstream 1.0kb upstream 2919 true Chr19: 43797832-43800750 Glycine max
Glyma.19G178800 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43799751-43800750 Glycine max
Glyma.19G178800 1.0kb downstream 1.0kb downstream 2919 true Chr19: 43796832-43799750 Glycine max
Glyma.19G178800 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43796832-43797831 Glycine max
Glyma.19G178800 2.0kb upstream 2.0kb upstream 3919 true Chr19: 43797832-43801750 Glycine max
Glyma.19G178800 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43799751-43801750 Glycine max
Glyma.19G178800 2.0kb downstream 2.0kb downstream 3919 true Chr19: 43795832-43799750 Glycine max
Glyma.19G178800 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43795832-43797831 Glycine max
Glyma.19G178800 5.0kb upstream 5.0kb upstream 6919 true Chr19: 43797832-43804750 Glycine max
Glyma.19G178800 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43799751-43804750 Glycine max
Glyma.19G178800 5.0kb downstream 5.0kb downstream 6919 true Chr19: 43792832-43799750 Glycine max
Glyma.19G178800 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43792832-43797831 Glycine max
Glyma.19G178800 10.0kb upstream 10.0kb upstream 11919 true Chr19: 43797832-43809750 Glycine max
Glyma.19G178800 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43799751-43809750 Glycine max
Glyma.19G178800 10.0kb downstream 10.0kb downstream 11919 true Chr19: 43787832-43799750 Glycine max
Glyma.19G178800 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43787832-43797831 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314244 5265 Fabidae View MSA
124070062 5270 Rosid View MSA
123740818 5271 Pentapetalae View MSA
122794573 5272 Eudicot View MSA
122046151 5273 Angiosperm View MSA
121344196 5274 Embryophyte View MSA
123424660 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.2248 0.0 165.584 High  
cufflinks 65.4613 0.0 248.822 High  
cufflinks 23.0661 0.0 70.0897 High Low
cufflinks 41.5112 0.0 154.585 High  
cufflinks 137.669 0.0 611.511 High High
cufflinks 143.821 0.0 665.35 High High
cufflinks 94.1223 0.0 377.99 High  
cufflinks 71.5674 0.0 283.962 High  
cufflinks 97.6415 0.0 397.137 High  
cufflinks 14.332     High  
cufflinks 3.567       Low
cufflinks 9.192     High  
cufflinks 39.295     High High
cufflinks 60.562     High High
cufflinks 3.183       Low
cufflinks 9.31     High  
cufflinks 8.588     High  
cufflinks 11.262     High  
cufflinks 12.246     High  
cufflinks 6.215        
cufflinks 6.391     High  
cufflinks 6.58        
cufflinks 12.287     High  
cufflinks 4.236       Low
cufflinks 8.411     High  
cufflinks 8.331     High  

0 Strain