Gene : Glyma.04G236800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12786:SF2 - SPLICING FACTOR 3A SUBUNIT 3 Genomic Order:  2368
Name:  ? Glyma.04G236800 Secondary Identifier:  ? PAC:30491215
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G236800 0.5kb upstream 0.5kb upstream 7636 true Chr04: 50529637-50537272 Glycine max
Glyma.04G236800 0.5kb upstream 0.5kb upstream 500 false Chr04: 50536773-50537272 Glycine max
Glyma.04G236800 0.5kb downstream 0.5kb downstream 7636 true Chr04: 50529137-50536772 Glycine max
Glyma.04G236800 0.5kb downstream 0.5kb downstream 500 false Chr04: 50529137-50529636 Glycine max
Glyma.04G236800 1.0kb upstream 1.0kb upstream 8136 true Chr04: 50529637-50537772 Glycine max
Glyma.04G236800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 50536773-50537772 Glycine max
Glyma.04G236800 1.0kb downstream 1.0kb downstream 8136 true Chr04: 50528637-50536772 Glycine max
Glyma.04G236800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 50528637-50529636 Glycine max
Glyma.04G236800 2.0kb upstream 2.0kb upstream 9136 true Chr04: 50529637-50538772 Glycine max
Glyma.04G236800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 50536773-50538772 Glycine max
Glyma.04G236800 2.0kb downstream 2.0kb downstream 9136 true Chr04: 50527637-50536772 Glycine max
Glyma.04G236800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 50527637-50529636 Glycine max
Glyma.04G236800 5.0kb upstream 5.0kb upstream 12136 true Chr04: 50529637-50541772 Glycine max
Glyma.04G236800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 50536773-50541772 Glycine max
Glyma.04G236800 5.0kb downstream 5.0kb downstream 12136 true Chr04: 50524637-50536772 Glycine max
Glyma.04G236800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 50524637-50529636 Glycine max
Glyma.04G236800 10.0kb upstream 10.0kb upstream 17136 true Chr04: 50529637-50546772 Glycine max
Glyma.04G236800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 50536773-50546772 Glycine max
Glyma.04G236800 10.0kb downstream 10.0kb downstream 17136 true Chr04: 50519637-50536772 Glycine max
Glyma.04G236800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 50519637-50529636 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306604 5265 Fabidae View MSA
124061347 5270 Rosid View MSA
123747659 5271 Pentapetalae View MSA
122793662 5272 Eudicot View MSA
122042756 5273 Angiosperm View MSA
123429134 5275 Viridiplantae View MSA
121345552 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.7999 0.0 36.8171    
cufflinks 16.2605 0.0 43.4475   High
cufflinks 9.59723 0.0 25.7367   Low
cufflinks 12.3209 0.0 32.8817    
cufflinks 14.734 0.0 39.3219    
cufflinks 12.8669 0.0 34.3316    
cufflinks 14.2069 0.0 37.9045    
cufflinks 13.8765 0.0 37.0212    
cufflinks 13.8973 0.0 37.0764    
cufflinks 3.683        
cufflinks 2.54       Low
cufflinks 4.047        
cufflinks 6.132       High
cufflinks 7.292     High High
cufflinks 3.223       Low
cufflinks 5.313        
cufflinks 3.093       Low
cufflinks 4.091        
cufflinks 6.234       High
cufflinks 4.996        
cufflinks 3.449        
cufflinks 5.05        
cufflinks 5.404        
cufflinks 3.121       Low
cufflinks 4.966        
cufflinks 3.891        

0 Strain