Gene : Glyma.04G243300 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2433
Name:  ? Glyma.04G243300 Secondary Identifier:  ? PAC:30487985
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G243300 0.5kb upstream 0.5kb upstream 2537 true Chr04: 51130670-51133206 Glycine max
Glyma.04G243300 0.5kb upstream 0.5kb upstream 500 false Chr04: 51132707-51133206 Glycine max
Glyma.04G243300 0.5kb downstream 0.5kb downstream 2537 true Chr04: 51130170-51132706 Glycine max
Glyma.04G243300 0.5kb downstream 0.5kb downstream 500 false Chr04: 51130170-51130669 Glycine max
Glyma.04G243300 1.0kb upstream 1.0kb upstream 3037 true Chr04: 51130670-51133706 Glycine max
Glyma.04G243300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 51132707-51133706 Glycine max
Glyma.04G243300 1.0kb downstream 1.0kb downstream 3037 true Chr04: 51129670-51132706 Glycine max
Glyma.04G243300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 51129670-51130669 Glycine max
Glyma.04G243300 2.0kb upstream 2.0kb upstream 4037 true Chr04: 51130670-51134706 Glycine max
Glyma.04G243300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 51132707-51134706 Glycine max
Glyma.04G243300 2.0kb downstream 2.0kb downstream 4037 true Chr04: 51128670-51132706 Glycine max
Glyma.04G243300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 51128670-51130669 Glycine max
Glyma.04G243300 5.0kb upstream 5.0kb upstream 7037 true Chr04: 51130670-51137706 Glycine max
Glyma.04G243300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 51132707-51137706 Glycine max
Glyma.04G243300 5.0kb downstream 5.0kb downstream 7037 true Chr04: 51125670-51132706 Glycine max
Glyma.04G243300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 51125670-51130669 Glycine max
Glyma.04G243300 10.0kb upstream 10.0kb upstream 12037 true Chr04: 51130670-51142706 Glycine max
Glyma.04G243300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 51132707-51142706 Glycine max
Glyma.04G243300 10.0kb downstream 10.0kb downstream 12037 true Chr04: 51120670-51132706 Glycine max
Glyma.04G243300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 51120670-51130669 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299420 5265 Fabidae View MSA
124061594 5270 Rosid View MSA
123740286 5271 Pentapetalae View MSA
122790311 5272 Eudicot View MSA
122046629 5273 Angiosperm View MSA
121310635 5274 Embryophyte View MSA
123348067 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.729602 0.0 2.62807   High
cufflinks 0.460967 0.0 1.70547    
cufflinks 0.252581 0.0 0.960251    
cufflinks 0.558906 0.0 2.04603    
cufflinks 0.418496 0.0 1.5552    
cufflinks 0.126785 0.0 0.496231 Low Low
cufflinks 0.462528 0.0 1.71026    
cufflinks 0.387169 0.0 1.44427    
cufflinks 0.640475 0.0 2.32468    
cufflinks 0.224       Low
cufflinks 0.303        
cufflinks 0.465        
cufflinks 0.457        
cufflinks 0.958       High
cufflinks 0.553       High
cufflinks 0.274        
cufflinks 0.326        
cufflinks 0.44        
cufflinks 0.588       High
cufflinks 0.258        
cufflinks 0.261        
cufflinks 0.401        
cufflinks 0.414        
cufflinks 0.301        
cufflinks 0.323        
cufflinks 0.272        

0 Strain