Gene : Glyma.19G216300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  2163
Name:  ? Glyma.19G216300 Secondary Identifier:  ? PAC:30513285
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G216300 0.5kb upstream 0.5kb upstream 1621 true Chr19: 46935185-46936805 Glycine max
Glyma.19G216300 0.5kb upstream 0.5kb upstream 500 false Chr19: 46936306-46936805 Glycine max
Glyma.19G216300 0.5kb downstream 0.5kb downstream 1621 true Chr19: 46934685-46936305 Glycine max
Glyma.19G216300 0.5kb downstream 0.5kb downstream 500 false Chr19: 46934685-46935184 Glycine max
Glyma.19G216300 1.0kb upstream 1.0kb upstream 2121 true Chr19: 46935185-46937305 Glycine max
Glyma.19G216300 1.0kb upstream 1.0kb upstream 1000 false Chr19: 46936306-46937305 Glycine max
Glyma.19G216300 1.0kb downstream 1.0kb downstream 2121 true Chr19: 46934185-46936305 Glycine max
Glyma.19G216300 1.0kb downstream 1.0kb downstream 1000 false Chr19: 46934185-46935184 Glycine max
Glyma.19G216300 2.0kb upstream 2.0kb upstream 3121 true Chr19: 46935185-46938305 Glycine max
Glyma.19G216300 2.0kb upstream 2.0kb upstream 2000 false Chr19: 46936306-46938305 Glycine max
Glyma.19G216300 2.0kb downstream 2.0kb downstream 3121 true Chr19: 46933185-46936305 Glycine max
Glyma.19G216300 2.0kb downstream 2.0kb downstream 2000 false Chr19: 46933185-46935184 Glycine max
Glyma.19G216300 5.0kb upstream 5.0kb upstream 6121 true Chr19: 46935185-46941305 Glycine max
Glyma.19G216300 5.0kb upstream 5.0kb upstream 5000 false Chr19: 46936306-46941305 Glycine max
Glyma.19G216300 5.0kb downstream 5.0kb downstream 6121 true Chr19: 46930185-46936305 Glycine max
Glyma.19G216300 5.0kb downstream 5.0kb downstream 5000 false Chr19: 46930185-46935184 Glycine max
Glyma.19G216300 10.0kb upstream 10.0kb upstream 11121 true Chr19: 46935185-46946305 Glycine max
Glyma.19G216300 10.0kb upstream 10.0kb upstream 10000 false Chr19: 46936306-46946305 Glycine max
Glyma.19G216300 10.0kb downstream 10.0kb downstream 11121 true Chr19: 46925185-46936305 Glycine max
Glyma.19G216300 10.0kb downstream 10.0kb downstream 10000 false Chr19: 46925185-46935184 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314753 5265 Fabidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 142.577 0.0 432.947 High High
cufflinks 53.432 0.0 144.797 High  
cufflinks 58.1917 0.0 158.32 High  
cufflinks 32.711 0.0 87.2823 High  
cufflinks 3.84773 0.0 12.3869   Low
cufflinks 3.56657 0.0 11.6468   Low
cufflinks 45.8595 0.0 123.491 High  
cufflinks 25.3216 0.0 67.6915 High  
cufflinks 5.14974 0.0 15.9447   Low
cufflinks 13.527     High  
cufflinks 0.304        
cufflinks 19.479     High  
cufflinks 0.014     Low Low
cufflinks 0.027     Low Low
cufflinks 0.561        
cufflinks 53.272     High High
cufflinks 0.039     Low Low
cufflinks 15.783     High  
cufflinks 16.601     High  
cufflinks 58.438     High High
cufflinks 0.081       Low
cufflinks 57.256     High High
cufflinks 36.579     High  
cufflinks 0.225        
cufflinks 57.117     High High
cufflinks 0.101        

0 Strain