Gene : Glyma.19G209300 G. max Wm82.a2.v1
Defline:  (1 of 6) PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2093
Name:  ? Glyma.19G209300 Secondary Identifier:  ? PAC:30512608
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G209300 0.5kb upstream 0.5kb upstream 1895 true Chr19: 46397266-46399160 Glycine max
Glyma.19G209300 0.5kb upstream 0.5kb upstream 500 false Chr19: 46398661-46399160 Glycine max
Glyma.19G209300 0.5kb downstream 0.5kb downstream 1895 true Chr19: 46396766-46398660 Glycine max
Glyma.19G209300 0.5kb downstream 0.5kb downstream 500 false Chr19: 46396766-46397265 Glycine max
Glyma.19G209300 1.0kb upstream 1.0kb upstream 2395 true Chr19: 46397266-46399660 Glycine max
Glyma.19G209300 1.0kb upstream 1.0kb upstream 1000 false Chr19: 46398661-46399660 Glycine max
Glyma.19G209300 1.0kb downstream 1.0kb downstream 2395 true Chr19: 46396266-46398660 Glycine max
Glyma.19G209300 1.0kb downstream 1.0kb downstream 1000 false Chr19: 46396266-46397265 Glycine max
Glyma.19G209300 2.0kb upstream 2.0kb upstream 3395 true Chr19: 46397266-46400660 Glycine max
Glyma.19G209300 2.0kb upstream 2.0kb upstream 2000 false Chr19: 46398661-46400660 Glycine max
Glyma.19G209300 2.0kb downstream 2.0kb downstream 3395 true Chr19: 46395266-46398660 Glycine max
Glyma.19G209300 2.0kb downstream 2.0kb downstream 2000 false Chr19: 46395266-46397265 Glycine max
Glyma.19G209300 5.0kb upstream 5.0kb upstream 6395 true Chr19: 46397266-46403660 Glycine max
Glyma.19G209300 5.0kb upstream 5.0kb upstream 5000 false Chr19: 46398661-46403660 Glycine max
Glyma.19G209300 5.0kb downstream 5.0kb downstream 6395 true Chr19: 46392266-46398660 Glycine max
Glyma.19G209300 5.0kb downstream 5.0kb downstream 5000 false Chr19: 46392266-46397265 Glycine max
Glyma.19G209300 10.0kb upstream 10.0kb upstream 11395 true Chr19: 46397266-46408660 Glycine max
Glyma.19G209300 10.0kb upstream 10.0kb upstream 10000 false Chr19: 46398661-46408660 Glycine max
Glyma.19G209300 10.0kb downstream 10.0kb downstream 11395 true Chr19: 46387266-46398660 Glycine max
Glyma.19G209300 10.0kb downstream 10.0kb downstream 10000 false Chr19: 46387266-46397265 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312397 5265 Fabidae View MSA
124074689 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.92713 0.0 6.59633    
cufflinks 1.34044 0.0 4.75263    
cufflinks 0.894463 0.0 3.25879    
cufflinks 1.37852 0.0 4.87113    
cufflinks 1.19059 0.0 4.23794    
cufflinks 0.303443 0.0 1.16242   Low
cufflinks 3.13356 0.0 10.0308   High
cufflinks 0.502425 0.0 1.88525   Low
cufflinks 1.0887 0.0 3.90959    
cufflinks 0.323       Low
cufflinks 0.505        
cufflinks 1.667       High
cufflinks 0.895        
cufflinks 1.453       High
cufflinks 0.759        
cufflinks 0.714        
cufflinks 0.609        
cufflinks 1.436       High
cufflinks 1.333       High
cufflinks 0.626        
cufflinks 0.422       Low
cufflinks 0.706        
cufflinks 0.834        
cufflinks 0.623        
cufflinks 0.965        
cufflinks 0.437       Low

0 Strain