Gene : Glyma.19G243400 G. max Wm82.a2.v1
Defline:  (1 of 2) 5.4.99.27 - tRNA pseudouridine(13) synthase / tRNA Psi(13) synthase Genomic Order:  2434
Name:  ? Glyma.19G243400 Secondary Identifier:  ? PAC:30513906
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G243400 0.5kb upstream 0.5kb upstream 10301 true Chr19: 49087201-49097501 Glycine max
Glyma.19G243400 0.5kb upstream 0.5kb upstream 500 false Chr19: 49087201-49087700 Glycine max
Glyma.19G243400 0.5kb downstream 0.5kb downstream 10301 true Chr19: 49087701-49098001 Glycine max
Glyma.19G243400 0.5kb downstream 0.5kb downstream 500 false Chr19: 49097502-49098001 Glycine max
Glyma.19G243400 1.0kb upstream 1.0kb upstream 10801 true Chr19: 49086701-49097501 Glycine max
Glyma.19G243400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 49086701-49087700 Glycine max
Glyma.19G243400 1.0kb downstream 1.0kb downstream 10801 true Chr19: 49087701-49098501 Glycine max
Glyma.19G243400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 49097502-49098501 Glycine max
Glyma.19G243400 2.0kb upstream 2.0kb upstream 11801 true Chr19: 49085701-49097501 Glycine max
Glyma.19G243400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 49085701-49087700 Glycine max
Glyma.19G243400 2.0kb downstream 2.0kb downstream 11801 true Chr19: 49087701-49099501 Glycine max
Glyma.19G243400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 49097502-49099501 Glycine max
Glyma.19G243400 5.0kb upstream 5.0kb upstream 14801 true Chr19: 49082701-49097501 Glycine max
Glyma.19G243400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 49082701-49087700 Glycine max
Glyma.19G243400 5.0kb downstream 5.0kb downstream 14801 true Chr19: 49087701-49102501 Glycine max
Glyma.19G243400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 49097502-49102501 Glycine max
Glyma.19G243400 10.0kb upstream 10.0kb upstream 19801 true Chr19: 49077701-49097501 Glycine max
Glyma.19G243400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 49077701-49087700 Glycine max
Glyma.19G243400 10.0kb downstream 10.0kb downstream 19801 true Chr19: 49087701-49107501 Glycine max
Glyma.19G243400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 49097502-49107501 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041433 5273 Angiosperm View MSA
122303878 5265 Fabidae View MSA
124065377 5270 Rosid View MSA
123738255 5271 Pentapetalae View MSA
122787643 5272 Eudicot View MSA
121347450 5274 Embryophyte View MSA
123427840 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.24109 0.0 11.8914    
cufflinks 7.21484 0.0 19.4447   High
cufflinks 4.7332 0.0 13.0797    
cufflinks 4.24536 0.0 11.8701    
cufflinks 4.59573 0.0 12.7952    
cufflinks 2.98482 0.0 8.70696   Low
cufflinks 5.42885 0.0 14.9147    
cufflinks 3.64579 0.0 10.3744    
cufflinks 4.63508 0.0 12.8755    
cufflinks 0.986        
cufflinks 0.609       Low
cufflinks 1.954        
cufflinks 1.46        
cufflinks 2.053        
cufflinks 1.124        
cufflinks 1.574        
cufflinks 0.682       Low
cufflinks 2.652       High
cufflinks 2.416       High
cufflinks 1.484        
cufflinks 0.921        
cufflinks 1.703        
cufflinks 1.927        
cufflinks 0.905        
cufflinks 1.524        
cufflinks 0.984        

0 Strain