Gene : Glyma.19G236400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10252//PTHR10252:SF49 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Genomic Order:  2364
Name:  ? Glyma.19G236400 Secondary Identifier:  ? PAC:30514187
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G236400 0.5kb upstream 0.5kb upstream 3502 true Chr19: 48540794-48544295 Glycine max
Glyma.19G236400 0.5kb upstream 0.5kb upstream 500 false Chr19: 48543796-48544295 Glycine max
Glyma.19G236400 0.5kb downstream 0.5kb downstream 3502 true Chr19: 48540294-48543795 Glycine max
Glyma.19G236400 0.5kb downstream 0.5kb downstream 500 false Chr19: 48540294-48540793 Glycine max
Glyma.19G236400 1.0kb upstream 1.0kb upstream 4002 true Chr19: 48540794-48544795 Glycine max
Glyma.19G236400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 48543796-48544795 Glycine max
Glyma.19G236400 1.0kb downstream 1.0kb downstream 4002 true Chr19: 48539794-48543795 Glycine max
Glyma.19G236400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 48539794-48540793 Glycine max
Glyma.19G236400 2.0kb upstream 2.0kb upstream 5002 true Chr19: 48540794-48545795 Glycine max
Glyma.19G236400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 48543796-48545795 Glycine max
Glyma.19G236400 2.0kb downstream 2.0kb downstream 5002 true Chr19: 48538794-48543795 Glycine max
Glyma.19G236400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 48538794-48540793 Glycine max
Glyma.19G236400 5.0kb upstream 5.0kb upstream 8002 true Chr19: 48540794-48548795 Glycine max
Glyma.19G236400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 48543796-48548795 Glycine max
Glyma.19G236400 5.0kb downstream 5.0kb downstream 8002 true Chr19: 48535794-48543795 Glycine max
Glyma.19G236400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 48535794-48540793 Glycine max
Glyma.19G236400 10.0kb upstream 10.0kb upstream 13002 true Chr19: 48540794-48553795 Glycine max
Glyma.19G236400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 48543796-48553795 Glycine max
Glyma.19G236400 10.0kb downstream 10.0kb downstream 13002 true Chr19: 48530794-48543795 Glycine max
Glyma.19G236400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 48530794-48540793 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303223 5265 Fabidae View MSA
124071144 5270 Rosid View MSA
123743416 5271 Pentapetalae View MSA
122794744 5272 Eudicot View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.5086 0.0 145.675 High  
cufflinks 20.0232 0.0 75.8988   Low
cufflinks 38.6034 0.0 150.233 High High
cufflinks 30.8327 0.0 117.213 High  
cufflinks 25.5491 0.0 96.9975 High  
cufflinks 33.7938 0.0 129.656 High  
cufflinks 26.5876 0.0 101.011 High  
cufflinks 39.6206 0.0 154.735 High High
cufflinks 30.3213 0.0 115.338 High  
cufflinks 4.021       Low
cufflinks 4.895        
cufflinks 5.321        
cufflinks 4.854        
cufflinks 4.188       Low
cufflinks 3.882       Low
cufflinks 5.369        
cufflinks 5.625       High
cufflinks 4.347        
cufflinks 4.9        
cufflinks 5.495        
cufflinks 5.121        
cufflinks 5.371        
cufflinks 4.338        
cufflinks 6.083     High High
cufflinks 5.326        
cufflinks 5.367        

0 Strain