Gene : Glyma.19G252200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11735:SF14 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Genomic Order:  2522
Name:  ? Glyma.19G252200 Secondary Identifier:  ? PAC:30513462
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY0-1587 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G252200 0.5kb upstream 0.5kb upstream 2519 true Chr19: 49769057-49771575 Glycine max
Glyma.19G252200 0.5kb upstream 0.5kb upstream 500 false Chr19: 49769057-49769556 Glycine max
Glyma.19G252200 0.5kb downstream 0.5kb downstream 2519 true Chr19: 49769557-49772075 Glycine max
Glyma.19G252200 0.5kb downstream 0.5kb downstream 500 false Chr19: 49771576-49772075 Glycine max
Glyma.19G252200 1.0kb upstream 1.0kb upstream 3019 true Chr19: 49768557-49771575 Glycine max
Glyma.19G252200 1.0kb upstream 1.0kb upstream 1000 false Chr19: 49768557-49769556 Glycine max
Glyma.19G252200 1.0kb downstream 1.0kb downstream 3019 true Chr19: 49769557-49772575 Glycine max
Glyma.19G252200 1.0kb downstream 1.0kb downstream 1000 false Chr19: 49771576-49772575 Glycine max
Glyma.19G252200 2.0kb upstream 2.0kb upstream 4019 true Chr19: 49767557-49771575 Glycine max
Glyma.19G252200 2.0kb upstream 2.0kb upstream 2000 false Chr19: 49767557-49769556 Glycine max
Glyma.19G252200 2.0kb downstream 2.0kb downstream 4019 true Chr19: 49769557-49773575 Glycine max
Glyma.19G252200 2.0kb downstream 2.0kb downstream 2000 false Chr19: 49771576-49773575 Glycine max
Glyma.19G252200 5.0kb upstream 5.0kb upstream 7019 true Chr19: 49764557-49771575 Glycine max
Glyma.19G252200 5.0kb upstream 5.0kb upstream 5000 false Chr19: 49764557-49769556 Glycine max
Glyma.19G252200 5.0kb downstream 5.0kb downstream 7019 true Chr19: 49769557-49776575 Glycine max
Glyma.19G252200 5.0kb downstream 5.0kb downstream 5000 false Chr19: 49771576-49776575 Glycine max
Glyma.19G252200 10.0kb upstream 10.0kb upstream 12019 true Chr19: 49759557-49771575 Glycine max
Glyma.19G252200 10.0kb upstream 10.0kb upstream 10000 false Chr19: 49759557-49769556 Glycine max
Glyma.19G252200 10.0kb downstream 10.0kb downstream 12019 true Chr19: 49769557-49781575 Glycine max
Glyma.19G252200 10.0kb downstream 10.0kb downstream 10000 false Chr19: 49771576-49781575 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298990 5265 Fabidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.83961 0.0 24.1414    
cufflinks 13.3304 0.0 41.7287   High
cufflinks 4.27988 0.0 16.9966   Low
cufflinks 4.91331 0.0 18.7891    
cufflinks 9.14994 0.0 29.692    
cufflinks 4.55213 0.0 17.8846    
cufflinks 4.62286 0.0 17.9558    
cufflinks 8.47216 0.0 29.1824    
cufflinks 7.21239 0.0 24.6875    
cufflinks 2.436        
cufflinks 0.55       Low
cufflinks 2.311        
cufflinks 3.325        
cufflinks 3.851        
cufflinks 0.42       Low
cufflinks 3.836        
cufflinks 1.908        
cufflinks 2.36        
cufflinks 5.114       High
cufflinks 3.812        
cufflinks 0.512       Low
cufflinks 3.842        
cufflinks 5.894       High
cufflinks 0.344       Low
cufflinks 3.772        
cufflinks 1.22        

0 Strain