Gene : Glyma.20G023100 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  231
Name:  ? Glyma.20G023100 Secondary Identifier:  ? PAC:30523165
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G023100 0.5kb upstream 0.5kb upstream 5169 true Chr20: 2445307-2450475 Glycine max
Glyma.20G023100 0.5kb upstream 0.5kb upstream 500 false Chr20: 2445307-2445806 Glycine max
Glyma.20G023100 0.5kb downstream 0.5kb downstream 5169 true Chr20: 2445807-2450975 Glycine max
Glyma.20G023100 0.5kb downstream 0.5kb downstream 500 false Chr20: 2450476-2450975 Glycine max
Glyma.20G023100 1.0kb upstream 1.0kb upstream 5669 true Chr20: 2444807-2450475 Glycine max
Glyma.20G023100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 2444807-2445806 Glycine max
Glyma.20G023100 1.0kb downstream 1.0kb downstream 5669 true Chr20: 2445807-2451475 Glycine max
Glyma.20G023100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 2450476-2451475 Glycine max
Glyma.20G023100 2.0kb upstream 2.0kb upstream 6669 true Chr20: 2443807-2450475 Glycine max
Glyma.20G023100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 2443807-2445806 Glycine max
Glyma.20G023100 2.0kb downstream 2.0kb downstream 6669 true Chr20: 2445807-2452475 Glycine max
Glyma.20G023100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 2450476-2452475 Glycine max
Glyma.20G023100 5.0kb upstream 5.0kb upstream 9669 true Chr20: 2440807-2450475 Glycine max
Glyma.20G023100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 2440807-2445806 Glycine max
Glyma.20G023100 5.0kb downstream 5.0kb downstream 9669 true Chr20: 2445807-2455475 Glycine max
Glyma.20G023100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 2450476-2455475 Glycine max
Glyma.20G023100 10.0kb upstream 10.0kb upstream 14669 true Chr20: 2435807-2450475 Glycine max
Glyma.20G023100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 2435807-2445806 Glycine max
Glyma.20G023100 10.0kb downstream 10.0kb downstream 14669 true Chr20: 2445807-2460475 Glycine max
Glyma.20G023100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 2450476-2460475 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311034 5265 Fabidae View MSA
124065193 5270 Rosid View MSA
123739429 5271 Pentapetalae View MSA
122786943 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.84008 0.0 15.917   High
cufflinks 2.39832 0.0 7.16583    
cufflinks 1.64929 0.0 5.16943    
cufflinks 1.9052 0.0 5.88061    
cufflinks 0.535211 0.0 1.9165    
cufflinks 0.169023 0.0 0.642362 Low Low
cufflinks 0.91174 0.0 3.11998    
cufflinks 1.63338 0.0 5.1628    
cufflinks 0.793584 0.0 2.74652    
cufflinks 0.327        
cufflinks 0.103       Low
cufflinks 2.112        
cufflinks 0.291        
cufflinks 0.24        
cufflinks 0.215        
cufflinks 2.416        
cufflinks 0.078       Low
cufflinks 2.675        
cufflinks 1.377        
cufflinks 4.165       High
cufflinks 0.151        
cufflinks 3.989       High
cufflinks 3.534       High
cufflinks 0.145        
cufflinks 3.224       High
cufflinks 0.114       Low

0 Strain