Gene : Glyma.20G023200 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Genomic Order:  232
Name:  ? Glyma.20G023200 Secondary Identifier:  ? PAC:30521937
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G023200 0.5kb upstream 0.5kb upstream 3842 true Chr20: 2459436-2463277 Glycine max
Glyma.20G023200 0.5kb upstream 0.5kb upstream 500 false Chr20: 2459436-2459935 Glycine max
Glyma.20G023200 0.5kb downstream 0.5kb downstream 3842 true Chr20: 2459936-2463777 Glycine max
Glyma.20G023200 0.5kb downstream 0.5kb downstream 500 false Chr20: 2463278-2463777 Glycine max
Glyma.20G023200 1.0kb upstream 1.0kb upstream 4342 true Chr20: 2458936-2463277 Glycine max
Glyma.20G023200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 2458936-2459935 Glycine max
Glyma.20G023200 1.0kb downstream 1.0kb downstream 4342 true Chr20: 2459936-2464277 Glycine max
Glyma.20G023200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 2463278-2464277 Glycine max
Glyma.20G023200 2.0kb upstream 2.0kb upstream 5342 true Chr20: 2457936-2463277 Glycine max
Glyma.20G023200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 2457936-2459935 Glycine max
Glyma.20G023200 2.0kb downstream 2.0kb downstream 5342 true Chr20: 2459936-2465277 Glycine max
Glyma.20G023200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 2463278-2465277 Glycine max
Glyma.20G023200 5.0kb upstream 5.0kb upstream 8342 true Chr20: 2454936-2463277 Glycine max
Glyma.20G023200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 2454936-2459935 Glycine max
Glyma.20G023200 5.0kb downstream 5.0kb downstream 8342 true Chr20: 2459936-2468277 Glycine max
Glyma.20G023200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 2463278-2468277 Glycine max
Glyma.20G023200 10.0kb upstream 10.0kb upstream 13342 true Chr20: 2449936-2463277 Glycine max
Glyma.20G023200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 2449936-2459935 Glycine max
Glyma.20G023200 10.0kb downstream 10.0kb downstream 13342 true Chr20: 2459936-2473277 Glycine max
Glyma.20G023200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 2463278-2473277 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314468 5265 Fabidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 27.3074 0.0 72.8696 High High
cufflinks 0.084073 0.0 0.341119 Low Low
cufflinks 1.38596 0.0 4.93337    
cufflinks 1.23971 0.0 4.45531    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.22803 0.0 4.41661    
cufflinks 0.494415 0.0 1.86662    
cufflinks 0.004     Low Low
cufflinks 0.017     Low  
cufflinks 4.926       High
cufflinks 0.973       High
cufflinks 1.225       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.025     Low  
cufflinks 0.823        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.087        

0 Strain