Gene : Glyma.20G025500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10693:SF27 - NUCLEAR TRANSPORT FACTOR 2 AND RNA RECOGNITION MOTIF DOMAIN-CONTAINING PROTEIN Genomic Order:  255
Name:  ? Glyma.20G025500 Secondary Identifier:  ? PAC:30520962
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G025500 0.5kb upstream 0.5kb upstream 5105 true Chr20: 2788107-2793211 Glycine max
Glyma.20G025500 0.5kb upstream 0.5kb upstream 500 false Chr20: 2788107-2788606 Glycine max
Glyma.20G025500 0.5kb downstream 0.5kb downstream 5105 true Chr20: 2788607-2793711 Glycine max
Glyma.20G025500 0.5kb downstream 0.5kb downstream 500 false Chr20: 2793212-2793711 Glycine max
Glyma.20G025500 1.0kb upstream 1.0kb upstream 5605 true Chr20: 2787607-2793211 Glycine max
Glyma.20G025500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 2787607-2788606 Glycine max
Glyma.20G025500 1.0kb downstream 1.0kb downstream 5605 true Chr20: 2788607-2794211 Glycine max
Glyma.20G025500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 2793212-2794211 Glycine max
Glyma.20G025500 2.0kb upstream 2.0kb upstream 6605 true Chr20: 2786607-2793211 Glycine max
Glyma.20G025500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 2786607-2788606 Glycine max
Glyma.20G025500 2.0kb downstream 2.0kb downstream 6605 true Chr20: 2788607-2795211 Glycine max
Glyma.20G025500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 2793212-2795211 Glycine max
Glyma.20G025500 5.0kb upstream 5.0kb upstream 9605 true Chr20: 2783607-2793211 Glycine max
Glyma.20G025500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 2783607-2788606 Glycine max
Glyma.20G025500 5.0kb downstream 5.0kb downstream 9605 true Chr20: 2788607-2798211 Glycine max
Glyma.20G025500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 2793212-2798211 Glycine max
Glyma.20G025500 10.0kb upstream 10.0kb upstream 14605 true Chr20: 2778607-2793211 Glycine max
Glyma.20G025500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 2778607-2788606 Glycine max
Glyma.20G025500 10.0kb downstream 10.0kb downstream 14605 true Chr20: 2788607-2803211 Glycine max
Glyma.20G025500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 2793212-2803211 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301999 5265 Fabidae View MSA
124070986 5270 Rosid View MSA
123751309 5271 Pentapetalae View MSA
122795066 5272 Eudicot View MSA
122049730 5273 Angiosperm View MSA
121351180 5274 Embryophyte View MSA
123426443 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.6123 0.0 47.0178   Low
cufflinks 23.6473 0.0 63.6523 High  
cufflinks 16.0614 0.0 42.8547   Low
cufflinks 29.8129 0.0 81.3335 High  
cufflinks 51.5978 0.0 148.74 High High
cufflinks 34.0831 0.0 94.0288 High  
cufflinks 34.7093 0.0 95.6601 High  
cufflinks 26.9385 0.0 73.0313 High  
cufflinks 29.1321 0.0 79.3627 High  
cufflinks 14.407     High  
cufflinks 4.758       Low
cufflinks 11.058     High  
cufflinks 29.779     High High
cufflinks 39.544     High High
cufflinks 5.11       Low
cufflinks 7.1        
cufflinks 10.454     High  
cufflinks 11.933     High  
cufflinks 13.844     High  
cufflinks 6.542        
cufflinks 6.211     High  
cufflinks 6.53        
cufflinks 10.541     High  
cufflinks 5.119       Low
cufflinks 6.471        
cufflinks 8.092     High  

0 Strain