Gene : Glyma.20G017000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10285:SF53 - URIDINE KINASE Genomic Order:  170
Name:  ? Glyma.20G017000 Secondary Identifier:  ? PAC:30522112
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7193 Glycine max pathologic  
Gmax PWY-7196 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G017000 0.5kb upstream 0.5kb upstream 21650 true Chr20: 1564698-1586347 Glycine max
Glyma.20G017000 0.5kb upstream 0.5kb upstream 500 false Chr20: 1564698-1565197 Glycine max
Glyma.20G017000 0.5kb downstream 0.5kb downstream 21650 true Chr20: 1565198-1586847 Glycine max
Glyma.20G017000 0.5kb downstream 0.5kb downstream 500 false Chr20: 1586348-1586847 Glycine max
Glyma.20G017000 1.0kb upstream 1.0kb upstream 22150 true Chr20: 1564198-1586347 Glycine max
Glyma.20G017000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 1564198-1565197 Glycine max
Glyma.20G017000 1.0kb downstream 1.0kb downstream 22150 true Chr20: 1565198-1587347 Glycine max
Glyma.20G017000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 1586348-1587347 Glycine max
Glyma.20G017000 2.0kb upstream 2.0kb upstream 23150 true Chr20: 1563198-1586347 Glycine max
Glyma.20G017000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 1563198-1565197 Glycine max
Glyma.20G017000 2.0kb downstream 2.0kb downstream 23150 true Chr20: 1565198-1588347 Glycine max
Glyma.20G017000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 1586348-1588347 Glycine max
Glyma.20G017000 5.0kb upstream 5.0kb upstream 26150 true Chr20: 1560198-1586347 Glycine max
Glyma.20G017000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 1560198-1565197 Glycine max
Glyma.20G017000 5.0kb downstream 5.0kb downstream 26150 true Chr20: 1565198-1591347 Glycine max
Glyma.20G017000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 1586348-1591347 Glycine max
Glyma.20G017000 10.0kb upstream 10.0kb upstream 31150 true Chr20: 1555198-1586347 Glycine max
Glyma.20G017000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 1555198-1565197 Glycine max
Glyma.20G017000 10.0kb downstream 10.0kb downstream 31150 true Chr20: 1565198-1596347 Glycine max
Glyma.20G017000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 1586348-1596347 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305996 5265 Fabidae View MSA
124067943 5270 Rosid View MSA
123741616 5271 Pentapetalae View MSA
122787243 5272 Eudicot View MSA
122044880 5273 Angiosperm View MSA
121351427 5274 Embryophyte View MSA
123427517 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.82157 0.0 27.2207    
cufflinks 5.03749 0.0 21.1974    
cufflinks 16.0293 0.0 74.9688   High
cufflinks 5.15675 0.0 24.2367    
cufflinks 3.23798 0.0 17.2365   Low
cufflinks 4.6918 0.0 22.5357    
cufflinks 7.10515 0.0 31.1781    
cufflinks 4.0856 0.0 18.3494    
cufflinks 7.29028 0.0 33.8391    
cufflinks 0.16        
cufflinks 0.135       Low
cufflinks 0.505       High
cufflinks 0.159        
cufflinks 0.126       Low
cufflinks 0.531       High
cufflinks 0.229        
cufflinks 0.182        
cufflinks 0.387       High
cufflinks 0.282        
cufflinks 0.336        
cufflinks 0.124       Low
cufflinks 0.317        
cufflinks 0.248        
cufflinks 0.122       Low
cufflinks 0.29        
cufflinks 0.192        

0 Strain