Gene : Glyma.20G010100 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  101
Name:  ? Glyma.20G010100 Secondary Identifier:  ? PAC:30521521
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G010100 0.5kb upstream 0.5kb upstream 5143 true Chr20: 872322-877464 Glycine max
Glyma.20G010100 0.5kb upstream 0.5kb upstream 500 false Chr20: 872322-872821 Glycine max
Glyma.20G010100 0.5kb downstream 0.5kb downstream 5143 true Chr20: 872822-877964 Glycine max
Glyma.20G010100 0.5kb downstream 0.5kb downstream 500 false Chr20: 877465-877964 Glycine max
Glyma.20G010100 1.0kb upstream 1.0kb upstream 5643 true Chr20: 871822-877464 Glycine max
Glyma.20G010100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 871822-872821 Glycine max
Glyma.20G010100 1.0kb downstream 1.0kb downstream 5643 true Chr20: 872822-878464 Glycine max
Glyma.20G010100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 877465-878464 Glycine max
Glyma.20G010100 2.0kb upstream 2.0kb upstream 6643 true Chr20: 870822-877464 Glycine max
Glyma.20G010100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 870822-872821 Glycine max
Glyma.20G010100 2.0kb downstream 2.0kb downstream 6643 true Chr20: 872822-879464 Glycine max
Glyma.20G010100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 877465-879464 Glycine max
Glyma.20G010100 5.0kb upstream 5.0kb upstream 9643 true Chr20: 867822-877464 Glycine max
Glyma.20G010100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 867822-872821 Glycine max
Glyma.20G010100 5.0kb downstream 5.0kb downstream 9643 true Chr20: 872822-882464 Glycine max
Glyma.20G010100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 877465-882464 Glycine max
Glyma.20G010100 10.0kb upstream 10.0kb upstream 14643 true Chr20: 862822-877464 Glycine max
Glyma.20G010100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 862822-872821 Glycine max
Glyma.20G010100 10.0kb downstream 10.0kb downstream 14643 true Chr20: 872822-887464 Glycine max
Glyma.20G010100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 877465-887464 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300181 5265 Fabidae View MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.27438 0.0 6.64057   High
cufflinks 1.27579 0.0 4.03952    
cufflinks 0.883979 0.0 2.93444    
cufflinks 1.64468 0.0 5.01476    
cufflinks 0.964438 0.0 3.16884    
cufflinks 0.559546 0.0 1.9538   Low
cufflinks 1.51397 0.0 4.6675    
cufflinks 0.993054 0.0 3.25508    
cufflinks 1.77297 0.0 5.34664    
cufflinks 0.79       Low
cufflinks 1.001        
cufflinks 1.635        
cufflinks 1.135        
cufflinks 0.831       Low
cufflinks 2.378       High
cufflinks 2.211       High
cufflinks 0.612       Low
cufflinks 2.021        
cufflinks 1.565        
cufflinks 2.224       High
cufflinks 0.985        
cufflinks 2.083        
cufflinks 1.935        
cufflinks 0.664       Low
cufflinks 2.191       High
cufflinks 0.975        

0 Strain