Gene : Glyma.20G012900 G. max Wm82.a2.v1
Defline:  (1 of 565) PF08263 - Leucine rich repeat N-terminal domain (LRRNT_2) Genomic Order:  129
Name:  ? Glyma.20G012900 Secondary Identifier:  ? PAC:30522497
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G012900 0.5kb upstream 0.5kb upstream 2695 true Chr20: 1082754-1085448 Glycine max
Glyma.20G012900 0.5kb upstream 0.5kb upstream 500 false Chr20: 1084949-1085448 Glycine max
Glyma.20G012900 0.5kb downstream 0.5kb downstream 2695 true Chr20: 1082254-1084948 Glycine max
Glyma.20G012900 0.5kb downstream 0.5kb downstream 500 false Chr20: 1082254-1082753 Glycine max
Glyma.20G012900 1.0kb upstream 1.0kb upstream 3195 true Chr20: 1082754-1085948 Glycine max
Glyma.20G012900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 1084949-1085948 Glycine max
Glyma.20G012900 1.0kb downstream 1.0kb downstream 3195 true Chr20: 1081754-1084948 Glycine max
Glyma.20G012900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 1081754-1082753 Glycine max
Glyma.20G012900 2.0kb upstream 2.0kb upstream 4195 true Chr20: 1082754-1086948 Glycine max
Glyma.20G012900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 1084949-1086948 Glycine max
Glyma.20G012900 2.0kb downstream 2.0kb downstream 4195 true Chr20: 1080754-1084948 Glycine max
Glyma.20G012900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 1080754-1082753 Glycine max
Glyma.20G012900 5.0kb upstream 5.0kb upstream 7195 true Chr20: 1082754-1089948 Glycine max
Glyma.20G012900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 1084949-1089948 Glycine max
Glyma.20G012900 5.0kb downstream 5.0kb downstream 7195 true Chr20: 1077754-1084948 Glycine max
Glyma.20G012900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 1077754-1082753 Glycine max
Glyma.20G012900 10.0kb upstream 10.0kb upstream 12195 true Chr20: 1082754-1094948 Glycine max
Glyma.20G012900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 1084949-1094948 Glycine max
Glyma.20G012900 10.0kb downstream 10.0kb downstream 12195 true Chr20: 1072754-1084948 Glycine max
Glyma.20G012900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 1072754-1082753 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311039 5265 Fabidae View MSA
124072972 5270 Rosid View MSA
123750423 5271 Pentapetalae View MSA
122791273 5272 Eudicot View MSA
122042283 5273 Angiosperm View MSA
121309946 5274 Embryophyte View MSA
123347571 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 76.888 0.0 234.174 High High
cufflinks 32.1094 0.0 87.8114 High  
cufflinks 30.4364 0.0 82.8278 High  
cufflinks 51.4945 0.0 148.055 High  
cufflinks 12.8805 0.0 34.4337    
cufflinks 11.9392 0.0 31.9809    
cufflinks 2.92197 0.0 8.96535   Low
cufflinks 44.1008 0.0 124.62 High  
cufflinks 19.7654 0.0 52.8565 High  
cufflinks 62.598     High  
cufflinks 23.84     High  
cufflinks 27.748     High  
cufflinks 9.818     High  
cufflinks 0.632       Low
cufflinks 9.508     High  
cufflinks 48.053     High  
cufflinks 18.752     High  
cufflinks 23.065     High  
cufflinks 31.23     High  
cufflinks 45.726     High  
cufflinks 24.168     High  
cufflinks 55.632     High  
cufflinks 33.208     High  
cufflinks 32.986     High  
cufflinks 32.266     High  
cufflinks 24.084     High  

0 Strain