Gene : Glyma.20G003100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR20932:SF8 - PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN Genomic Order:  31
Name:  ? Glyma.20G003100 Secondary Identifier:  ? PAC:30521991
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G003100 0.5kb upstream 0.5kb upstream 4949 true Chr20: 288005-292953 Glycine max
Glyma.20G003100 0.5kb upstream 0.5kb upstream 500 false Chr20: 292454-292953 Glycine max
Glyma.20G003100 0.5kb downstream 0.5kb downstream 4949 true Chr20: 287505-292453 Glycine max
Glyma.20G003100 0.5kb downstream 0.5kb downstream 500 false Chr20: 287505-288004 Glycine max
Glyma.20G003100 1.0kb upstream 1.0kb upstream 5449 true Chr20: 288005-293453 Glycine max
Glyma.20G003100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 292454-293453 Glycine max
Glyma.20G003100 1.0kb downstream 1.0kb downstream 5449 true Chr20: 287005-292453 Glycine max
Glyma.20G003100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 287005-288004 Glycine max
Glyma.20G003100 2.0kb upstream 2.0kb upstream 6449 true Chr20: 288005-294453 Glycine max
Glyma.20G003100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 292454-294453 Glycine max
Glyma.20G003100 2.0kb downstream 2.0kb downstream 6449 true Chr20: 286005-292453 Glycine max
Glyma.20G003100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 286005-288004 Glycine max
Glyma.20G003100 5.0kb upstream 5.0kb upstream 9449 true Chr20: 288005-297453 Glycine max
Glyma.20G003100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 292454-297453 Glycine max
Glyma.20G003100 5.0kb downstream 5.0kb downstream 9449 true Chr20: 283005-292453 Glycine max
Glyma.20G003100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 283005-288004 Glycine max
Glyma.20G003100 10.0kb upstream 10.0kb upstream 14449 true Chr20: 288005-302453 Glycine max
Glyma.20G003100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 292454-302453 Glycine max
Glyma.20G003100 10.0kb downstream 10.0kb downstream 14449 true Chr20: 278005-292453 Glycine max
Glyma.20G003100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 278005-288004 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040928 5273 Angiosperm View MSA
122308369 5265 Fabidae View MSA
124070010 5270 Rosid View MSA
123744886 5271 Pentapetalae View MSA
122793061 5272 Eudicot View MSA
121350889 5274 Embryophyte View MSA
123426344 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.78187 0.0 20.315    
cufflinks 2.88366 0.0 14.5136    
cufflinks 4.28251 0.0 25.253    
cufflinks 2.95829 0.0 16.8027    
cufflinks 2.96994 0.0 14.536    
cufflinks 4.42583 0.0 21.9061    
cufflinks 5.33085 0.0 25.8662   High
cufflinks 3.22384 0.0 18.0662    
cufflinks 3.02655 0.0 16.9726    
cufflinks 0.228        
cufflinks 0.258        
cufflinks 0.679       High
cufflinks 0.356        
cufflinks 0.284        
cufflinks 0.154       Low
cufflinks 0.23        
cufflinks 0.16       Low
cufflinks 0.596       High
cufflinks 0.33        
cufflinks 0.312        
cufflinks 0.228        
cufflinks 0.337        
cufflinks 0.273        
cufflinks 0.371        
cufflinks 0.283        
cufflinks 0.241        

0 Strain