Gene : Glyma.20G050800 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11404:SF17 - SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC Genomic Order:  508
Name:  ? Glyma.20G050800 Secondary Identifier:  ? PAC:30520667
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax DETOX1-PWY Glycine max pathologic  
Gmax DETOX1-PWY-1 Glycine max pathologic  
Gmax PWY-6854 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G050800 0.5kb upstream 0.5kb upstream 6916 true Chr20: 11060605-11067520 Glycine max
Glyma.20G050800 0.5kb upstream 0.5kb upstream 500 false Chr20: 11060605-11061104 Glycine max
Glyma.20G050800 0.5kb downstream 0.5kb downstream 6916 true Chr20: 11061105-11068020 Glycine max
Glyma.20G050800 0.5kb downstream 0.5kb downstream 500 false Chr20: 11067521-11068020 Glycine max
Glyma.20G050800 1.0kb upstream 1.0kb upstream 7416 true Chr20: 11060105-11067520 Glycine max
Glyma.20G050800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 11060105-11061104 Glycine max
Glyma.20G050800 1.0kb downstream 1.0kb downstream 7416 true Chr20: 11061105-11068520 Glycine max
Glyma.20G050800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 11067521-11068520 Glycine max
Glyma.20G050800 2.0kb upstream 2.0kb upstream 8416 true Chr20: 11059105-11067520 Glycine max
Glyma.20G050800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 11059105-11061104 Glycine max
Glyma.20G050800 2.0kb downstream 2.0kb downstream 8416 true Chr20: 11061105-11069520 Glycine max
Glyma.20G050800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 11067521-11069520 Glycine max
Glyma.20G050800 5.0kb upstream 5.0kb upstream 11416 true Chr20: 11056105-11067520 Glycine max
Glyma.20G050800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 11056105-11061104 Glycine max
Glyma.20G050800 5.0kb downstream 5.0kb downstream 11416 true Chr20: 11061105-11072520 Glycine max
Glyma.20G050800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 11067521-11072520 Glycine max
Glyma.20G050800 10.0kb upstream 10.0kb upstream 16416 true Chr20: 11051105-11067520 Glycine max
Glyma.20G050800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 11051105-11061104 Glycine max
Glyma.20G050800 10.0kb downstream 10.0kb downstream 16416 true Chr20: 11061105-11077520 Glycine max
Glyma.20G050800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 11067521-11077520 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307249 5265 Fabidae View MSA
124067465 5270 Rosid View MSA
123740223 5271 Pentapetalae View MSA
122788752 5272 Eudicot View MSA
122044976 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.00905 0.0 29.8019    
cufflinks 13.0966 0.0 46.7668   High
cufflinks 3.24759 0.0 10.7582   Low
cufflinks 6.27961 0.0 22.6004    
cufflinks 5.45582 0.0 20.6975    
cufflinks 4.14885 0.0 17.126    
cufflinks 11.7776 0.0 42.6437   High
cufflinks 3.89298 0.0 16.3755    
cufflinks 3.70396 0.0 12.1054    
cufflinks 0.551        
cufflinks 0.102       Low
cufflinks 0.849        
cufflinks 0.682        
cufflinks 0.804        
cufflinks 0.078       Low
cufflinks 1.751       High
cufflinks 0.171        
cufflinks 0.763        
cufflinks 1.376        
cufflinks 1.44        
cufflinks 0.152       Low
cufflinks 1.538        
cufflinks 2.181       High
cufflinks 0.123       Low
cufflinks 1.833       High
cufflinks 0.159       Low

0 Strain