Gene : Glyma.20G050900 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR20973 - NON-SMC ELEMENT 1-RELATED Genomic Order:  509
Name:  ? Glyma.20G050900 Secondary Identifier:  ? PAC:30523148
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G050900 0.5kb upstream 0.5kb upstream 11167 true Chr20: 11232820-11243986 Glycine max
Glyma.20G050900 0.5kb upstream 0.5kb upstream 500 false Chr20: 11232820-11233319 Glycine max
Glyma.20G050900 0.5kb downstream 0.5kb downstream 11167 true Chr20: 11233320-11244486 Glycine max
Glyma.20G050900 0.5kb downstream 0.5kb downstream 500 false Chr20: 11243987-11244486 Glycine max
Glyma.20G050900 1.0kb upstream 1.0kb upstream 11667 true Chr20: 11232320-11243986 Glycine max
Glyma.20G050900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 11232320-11233319 Glycine max
Glyma.20G050900 1.0kb downstream 1.0kb downstream 11667 true Chr20: 11233320-11244986 Glycine max
Glyma.20G050900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 11243987-11244986 Glycine max
Glyma.20G050900 2.0kb upstream 2.0kb upstream 12667 true Chr20: 11231320-11243986 Glycine max
Glyma.20G050900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 11231320-11233319 Glycine max
Glyma.20G050900 2.0kb downstream 2.0kb downstream 12667 true Chr20: 11233320-11245986 Glycine max
Glyma.20G050900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 11243987-11245986 Glycine max
Glyma.20G050900 5.0kb upstream 5.0kb upstream 15667 true Chr20: 11228320-11243986 Glycine max
Glyma.20G050900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 11228320-11233319 Glycine max
Glyma.20G050900 5.0kb downstream 5.0kb downstream 15667 true Chr20: 11233320-11248986 Glycine max
Glyma.20G050900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 11243987-11248986 Glycine max
Glyma.20G050900 10.0kb upstream 10.0kb upstream 20667 true Chr20: 11223320-11243986 Glycine max
Glyma.20G050900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 11223320-11233319 Glycine max
Glyma.20G050900 10.0kb downstream 10.0kb downstream 20667 true Chr20: 11233320-11253986 Glycine max
Glyma.20G050900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 11243987-11253986 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306773 5265 Fabidae View MSA
124060843 5270 Rosid View MSA
123738022 5271 Pentapetalae View MSA
122793177 5272 Eudicot View MSA
122042015 5273 Angiosperm View MSA
121350451 5274 Embryophyte View MSA
123426397 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.21621 0.0 12.2817   Low
cufflinks 8.89189 0.0 34.0298   High
cufflinks 6.31892 0.0 25.8519    
cufflinks 3.80916 0.0 13.8027    
cufflinks 3.42338 0.0 12.962    
cufflinks 3.39492 0.0 13.251    
cufflinks 6.92997 0.0 25.5048   High
cufflinks 3.61644 0.0 15.299    
cufflinks 5.43249 0.0 21.2995    
cufflinks 0.156       Low
cufflinks 0.305        
cufflinks 0.29        
cufflinks 0.286        
cufflinks 0.371        
cufflinks 0.368        
cufflinks 0.224        
cufflinks 0.146       Low
cufflinks 0.272        
cufflinks 0.513       High
cufflinks 0.169       Low
cufflinks 0.294        
cufflinks 0.221        
cufflinks 0.395       High
cufflinks 0.401       High
cufflinks 0.213        
cufflinks 0.233        

0 Strain