Gene : Glyma.20G043000 G. max Wm82.a2.v1
Defline:  (1 of 5) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Genomic Order:  430
Name:  ? Glyma.20G043000 Secondary Identifier:  ? PAC:30521023
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax LEU-DEG2-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G043000 0.5kb upstream 0.5kb upstream 8003 true Chr20: 7758740-7766742 Glycine max
Glyma.20G043000 0.5kb upstream 0.5kb upstream 500 false Chr20: 7766243-7766742 Glycine max
Glyma.20G043000 0.5kb downstream 0.5kb downstream 8003 true Chr20: 7758240-7766242 Glycine max
Glyma.20G043000 0.5kb downstream 0.5kb downstream 500 false Chr20: 7758240-7758739 Glycine max
Glyma.20G043000 1.0kb upstream 1.0kb upstream 8503 true Chr20: 7758740-7767242 Glycine max
Glyma.20G043000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 7766243-7767242 Glycine max
Glyma.20G043000 1.0kb downstream 1.0kb downstream 8503 true Chr20: 7757740-7766242 Glycine max
Glyma.20G043000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 7757740-7758739 Glycine max
Glyma.20G043000 2.0kb upstream 2.0kb upstream 9503 true Chr20: 7758740-7768242 Glycine max
Glyma.20G043000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 7766243-7768242 Glycine max
Glyma.20G043000 2.0kb downstream 2.0kb downstream 9503 true Chr20: 7756740-7766242 Glycine max
Glyma.20G043000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 7756740-7758739 Glycine max
Glyma.20G043000 5.0kb upstream 5.0kb upstream 12503 true Chr20: 7758740-7771242 Glycine max
Glyma.20G043000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 7766243-7771242 Glycine max
Glyma.20G043000 5.0kb downstream 5.0kb downstream 12503 true Chr20: 7753740-7766242 Glycine max
Glyma.20G043000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 7753740-7758739 Glycine max
Glyma.20G043000 10.0kb upstream 10.0kb upstream 17503 true Chr20: 7758740-7776242 Glycine max
Glyma.20G043000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 7766243-7776242 Glycine max
Glyma.20G043000 10.0kb downstream 10.0kb downstream 17503 true Chr20: 7748740-7766242 Glycine max
Glyma.20G043000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 7748740-7758739 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314208 5265 Fabidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.3924 0.0 71.1108   High
cufflinks 3.86621 0.0 14.1901    
cufflinks 12.2511 0.0 42.2236    
cufflinks 9.93291 0.0 34.6754    
cufflinks 3.00593 0.0 12.0195   Low
cufflinks 17.7022 0.0 61.2526   High
cufflinks 3.45937 0.0 13.1461    
cufflinks 5.58004 0.0 18.6395    
cufflinks 4.63249 0.0 16.1603    
cufflinks 0.681        
cufflinks 1.365        
cufflinks 1.778       High
cufflinks 0.853        
cufflinks 0.316       Low
cufflinks 0.765        
cufflinks 0.931        
cufflinks 1.404        
cufflinks 1.216        
cufflinks 0.654        
cufflinks 0.853        
cufflinks 1.103        
cufflinks 1.127        
cufflinks 1.076        
cufflinks 1.994       High
cufflinks 0.974        
cufflinks 1.24        

0 Strain