Gene : Glyma.20G046800 G. max Wm82.a2.v1
Defline:  (1 of 1) 2.7.1.148//2.7.4.26 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase / CMK Genomic Order:  468
Name:  ? Glyma.20G046800 Secondary Identifier:  ? PAC:30521942
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G046800 0.5kb upstream 0.5kb upstream 7024 true Chr20: 8661300-8668323 Glycine max
Glyma.20G046800 0.5kb upstream 0.5kb upstream 500 false Chr20: 8667824-8668323 Glycine max
Glyma.20G046800 0.5kb downstream 0.5kb downstream 7024 true Chr20: 8660800-8667823 Glycine max
Glyma.20G046800 0.5kb downstream 0.5kb downstream 500 false Chr20: 8660800-8661299 Glycine max
Glyma.20G046800 1.0kb upstream 1.0kb upstream 7524 true Chr20: 8661300-8668823 Glycine max
Glyma.20G046800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 8667824-8668823 Glycine max
Glyma.20G046800 1.0kb downstream 1.0kb downstream 7524 true Chr20: 8660300-8667823 Glycine max
Glyma.20G046800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 8660300-8661299 Glycine max
Glyma.20G046800 2.0kb upstream 2.0kb upstream 8524 true Chr20: 8661300-8669823 Glycine max
Glyma.20G046800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 8667824-8669823 Glycine max
Glyma.20G046800 2.0kb downstream 2.0kb downstream 8524 true Chr20: 8659300-8667823 Glycine max
Glyma.20G046800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 8659300-8661299 Glycine max
Glyma.20G046800 5.0kb upstream 5.0kb upstream 11524 true Chr20: 8661300-8672823 Glycine max
Glyma.20G046800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 8667824-8672823 Glycine max
Glyma.20G046800 5.0kb downstream 5.0kb downstream 11524 true Chr20: 8656300-8667823 Glycine max
Glyma.20G046800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 8656300-8661299 Glycine max
Glyma.20G046800 10.0kb upstream 10.0kb upstream 16524 true Chr20: 8661300-8677823 Glycine max
Glyma.20G046800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 8667824-8677823 Glycine max
Glyma.20G046800 10.0kb downstream 10.0kb downstream 16524 true Chr20: 8651300-8667823 Glycine max
Glyma.20G046800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 8651300-8661299 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301142 5265 Fabidae View MSA
124062770 5270 Rosid View MSA
123737425 5271 Pentapetalae View MSA
122788330 5272 Eudicot View MSA
122044611 5273 Angiosperm View MSA
121345778 5274 Embryophyte View MSA
123424084 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.7254 0.0 34.3334   High
cufflinks 5.05551 0.0 14.8149    
cufflinks 2.21306 0.0 7.24287    
cufflinks 4.29228 0.0 12.8518    
cufflinks 3.80618 0.0 11.6443    
cufflinks 13.2818 0.0 35.7413   High
cufflinks 5.91844 0.0 17.0834    
cufflinks 1.16463 0.0 4.09928   Low
cufflinks 4.10884 0.0 12.389    
cufflinks 0.549       Low
cufflinks 3.426       High
cufflinks 1.261        
cufflinks 2.315        
cufflinks 1.158        
cufflinks 0.963       Low
cufflinks 1.687        
cufflinks 1.791        
cufflinks 2.717        
cufflinks 1.419        
cufflinks 1.827        
cufflinks 3.205       High
cufflinks 1.943        
cufflinks 2.131        
cufflinks 5.554       High
cufflinks 1.696        
cufflinks 2.122        

0 Strain