Gene : Glyma.20G027100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31471:SF5 - F7A19.1 PROTEIN-RELATED Genomic Order:  271
Name:  ? Glyma.20G027100 Secondary Identifier:  ? PAC:30519536
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G027100 0.5kb upstream 0.5kb upstream 4667 true Chr20: 3002124-3006790 Glycine max
Glyma.20G027100 0.5kb upstream 0.5kb upstream 500 false Chr20: 3002124-3002623 Glycine max
Glyma.20G027100 0.5kb downstream 0.5kb downstream 4667 true Chr20: 3002624-3007290 Glycine max
Glyma.20G027100 0.5kb downstream 0.5kb downstream 500 false Chr20: 3006791-3007290 Glycine max
Glyma.20G027100 1.0kb upstream 1.0kb upstream 5167 true Chr20: 3001624-3006790 Glycine max
Glyma.20G027100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 3001624-3002623 Glycine max
Glyma.20G027100 1.0kb downstream 1.0kb downstream 5167 true Chr20: 3002624-3007790 Glycine max
Glyma.20G027100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 3006791-3007790 Glycine max
Glyma.20G027100 2.0kb upstream 2.0kb upstream 6167 true Chr20: 3000624-3006790 Glycine max
Glyma.20G027100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 3000624-3002623 Glycine max
Glyma.20G027100 2.0kb downstream 2.0kb downstream 6167 true Chr20: 3002624-3008790 Glycine max
Glyma.20G027100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 3006791-3008790 Glycine max
Glyma.20G027100 5.0kb upstream 5.0kb upstream 9167 true Chr20: 2997624-3006790 Glycine max
Glyma.20G027100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 2997624-3002623 Glycine max
Glyma.20G027100 5.0kb downstream 5.0kb downstream 9167 true Chr20: 3002624-3011790 Glycine max
Glyma.20G027100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 3006791-3011790 Glycine max
Glyma.20G027100 10.0kb upstream 10.0kb upstream 14167 true Chr20: 2992624-3006790 Glycine max
Glyma.20G027100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 2992624-3002623 Glycine max
Glyma.20G027100 10.0kb downstream 10.0kb downstream 14167 true Chr20: 3002624-3016790 Glycine max
Glyma.20G027100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 3006791-3016790 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313838 5265 Fabidae View MSA
124067331 5270 Rosid View MSA
123743301 5271 Pentapetalae View MSA
122785962 5272 Eudicot View MSA
122046152 5273 Angiosperm View MSA
121351512 5274 Embryophyte View MSA
123382200 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.33662 0.0 2.50953    
cufflinks 0.45701 0.0 2.20759    
cufflinks 0.469587 0.0 3.33865    
cufflinks 0.561643 0.0 3.46761    
cufflinks 0.39303 0.0 1.94065    
cufflinks 0.175921 0.0 0.68468 Low Low
cufflinks 0.25943 0.0 1.29562   Low
cufflinks 0.754944 0.0 3.44055   High
cufflinks 0.817314 0.0 3.66613   High
cufflinks 0.307       High
cufflinks 0.177        
cufflinks 0.1     Low  
cufflinks 0.277       High
cufflinks 0.038     Low Low
cufflinks 0.044     Low Low
cufflinks 0.098     Low  
cufflinks 0.159        
cufflinks 0.29       High
cufflinks 0.042     Low Low
cufflinks 0.145        
cufflinks 0.216        
cufflinks 0.183        
cufflinks 0.107        
cufflinks 0.106        
cufflinks 0.181        
cufflinks 0.175        

0 Strain