Gene : Glyma.20G053200 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR21499:SF33 - HOMOSERINE DEHYDROGENASE Genomic Order:  532
Name:  ? Glyma.20G053200 Secondary Identifier:  ? PAC:30522652
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax HOMOSERSYN-PWY Glycine max pathologic  
Gmax PWY-3001 Glycine max pathologic  
Gmax PWY-724 Glycine max pathologic  
Gmax THRESYN-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G053200 0.5kb upstream 0.5kb upstream 9963 true Chr20: 12030619-12040581 Glycine max
Glyma.20G053200 0.5kb upstream 0.5kb upstream 500 false Chr20: 12040082-12040581 Glycine max
Glyma.20G053200 0.5kb downstream 0.5kb downstream 9963 true Chr20: 12030119-12040081 Glycine max
Glyma.20G053200 0.5kb downstream 0.5kb downstream 500 false Chr20: 12030119-12030618 Glycine max
Glyma.20G053200 1.0kb upstream 1.0kb upstream 10463 true Chr20: 12030619-12041081 Glycine max
Glyma.20G053200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 12040082-12041081 Glycine max
Glyma.20G053200 1.0kb downstream 1.0kb downstream 10463 true Chr20: 12029619-12040081 Glycine max
Glyma.20G053200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 12029619-12030618 Glycine max
Glyma.20G053200 2.0kb upstream 2.0kb upstream 11463 true Chr20: 12030619-12042081 Glycine max
Glyma.20G053200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 12040082-12042081 Glycine max
Glyma.20G053200 2.0kb downstream 2.0kb downstream 11463 true Chr20: 12028619-12040081 Glycine max
Glyma.20G053200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 12028619-12030618 Glycine max
Glyma.20G053200 5.0kb upstream 5.0kb upstream 14463 true Chr20: 12030619-12045081 Glycine max
Glyma.20G053200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 12040082-12045081 Glycine max
Glyma.20G053200 5.0kb downstream 5.0kb downstream 14463 true Chr20: 12025619-12040081 Glycine max
Glyma.20G053200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 12025619-12030618 Glycine max
Glyma.20G053200 10.0kb upstream 10.0kb upstream 19463 true Chr20: 12030619-12050081 Glycine max
Glyma.20G053200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 12040082-12050081 Glycine max
Glyma.20G053200 10.0kb downstream 10.0kb downstream 19463 true Chr20: 12020619-12040081 Glycine max
Glyma.20G053200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 12020619-12030618 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305491 5265 Fabidae View MSA
124062775 5270 Rosid View MSA
123740432 5271 Pentapetalae View MSA
122769980 5272 Eudicot View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.30581 0.0 24.2095   Low
cufflinks 13.8597 0.0 41.8877    
cufflinks 6.46297 0.0 21.8588   Low
cufflinks 15.9274 0.0 47.6772    
cufflinks 13.0969 0.0 39.8827    
cufflinks 8.14832 0.0 26.4776    
cufflinks 25.2252 0.0 75.3885 High High
cufflinks 11.3594 0.0 34.9762    
cufflinks 13.073 0.0 39.5753    
cufflinks 1.864        
cufflinks 0.214       Low
cufflinks 1.771        
cufflinks 2.815        
cufflinks 3.619       High
cufflinks 0.872        
cufflinks 1.899        
cufflinks 0.834        
cufflinks 2.847        
cufflinks 2.574        
cufflinks 1.866        
cufflinks 0.473       Low
cufflinks 1.911        
cufflinks 2.151        
cufflinks 0.301       Low
cufflinks 1.911        
cufflinks 0.857        

0 Strain