Gene : Glyma.20G053500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31669:SF45 - PROTEIN FAR1-RELATED SEQUENCE 3 Genomic Order:  535
Name:  ? Glyma.20G053500 Secondary Identifier:  ? PAC:30519526
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G053500 0.5kb upstream 0.5kb upstream 18294 true Chr20: 12277293-12295586 Glycine max
Glyma.20G053500 0.5kb upstream 0.5kb upstream 500 false Chr20: 12277293-12277792 Glycine max
Glyma.20G053500 0.5kb downstream 0.5kb downstream 18294 true Chr20: 12277793-12296086 Glycine max
Glyma.20G053500 0.5kb downstream 0.5kb downstream 500 false Chr20: 12295587-12296086 Glycine max
Glyma.20G053500 1.0kb upstream 1.0kb upstream 18794 true Chr20: 12276793-12295586 Glycine max
Glyma.20G053500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 12276793-12277792 Glycine max
Glyma.20G053500 1.0kb downstream 1.0kb downstream 18794 true Chr20: 12277793-12296586 Glycine max
Glyma.20G053500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 12295587-12296586 Glycine max
Glyma.20G053500 2.0kb upstream 2.0kb upstream 19794 true Chr20: 12275793-12295586 Glycine max
Glyma.20G053500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 12275793-12277792 Glycine max
Glyma.20G053500 2.0kb downstream 2.0kb downstream 19794 true Chr20: 12277793-12297586 Glycine max
Glyma.20G053500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 12295587-12297586 Glycine max
Glyma.20G053500 5.0kb upstream 5.0kb upstream 22794 true Chr20: 12272793-12295586 Glycine max
Glyma.20G053500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 12272793-12277792 Glycine max
Glyma.20G053500 5.0kb downstream 5.0kb downstream 22794 true Chr20: 12277793-12300586 Glycine max
Glyma.20G053500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 12295587-12300586 Glycine max
Glyma.20G053500 10.0kb upstream 10.0kb upstream 27794 true Chr20: 12267793-12295586 Glycine max
Glyma.20G053500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 12267793-12277792 Glycine max
Glyma.20G053500 10.0kb downstream 10.0kb downstream 27794 true Chr20: 12277793-12305586 Glycine max
Glyma.20G053500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 12295587-12305586 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305879 5265 Fabidae View MSA
124064259 5270 Rosid View MSA
123753434 5271 Pentapetalae View MSA
122797932 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.71914 0.0 23.2665    
cufflinks 9.50686 0.0 25.3644    
cufflinks 11.4483 0.0 30.6389    
cufflinks 9.64313 0.0 25.7305    
cufflinks 5.52 0.0 14.9379   Low
cufflinks 5.62569 0.0 15.1952   Low
cufflinks 13.8193 0.0 37.1427   High
cufflinks 8.01892 0.0 21.4148    
cufflinks 8.58139 0.0 22.9002    
cufflinks 1.301        
cufflinks 1.282        
cufflinks 2.359       High
cufflinks 1.076       Low
cufflinks 0.976       Low
cufflinks 1.783        
cufflinks 2.149        
cufflinks 1.477        
cufflinks 2.306        
cufflinks 2.373       High
cufflinks 2.414       High
cufflinks 1.27        
cufflinks 2.409       High
cufflinks 2.301        
cufflinks 1.438        
cufflinks 2.176        
cufflinks 1.256        

0 Strain