Gene : Glyma.20G054400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR19316:SF6 - NUCLEOTIDE EXCHANGE FACTOR SIL1 Genomic Order:  544
Name:  ? Glyma.20G054400 Secondary Identifier:  ? PAC:30522590
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G054400 0.5kb upstream 0.5kb upstream 2617 true Chr20: 12567270-12569886 Glycine max
Glyma.20G054400 0.5kb upstream 0.5kb upstream 500 false Chr20: 12567270-12567769 Glycine max
Glyma.20G054400 0.5kb downstream 0.5kb downstream 2617 true Chr20: 12567770-12570386 Glycine max
Glyma.20G054400 0.5kb downstream 0.5kb downstream 500 false Chr20: 12569887-12570386 Glycine max
Glyma.20G054400 1.0kb upstream 1.0kb upstream 3117 true Chr20: 12566770-12569886 Glycine max
Glyma.20G054400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 12566770-12567769 Glycine max
Glyma.20G054400 1.0kb downstream 1.0kb downstream 3117 true Chr20: 12567770-12570886 Glycine max
Glyma.20G054400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 12569887-12570886 Glycine max
Glyma.20G054400 2.0kb upstream 2.0kb upstream 4117 true Chr20: 12565770-12569886 Glycine max
Glyma.20G054400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 12565770-12567769 Glycine max
Glyma.20G054400 2.0kb downstream 2.0kb downstream 4117 true Chr20: 12567770-12571886 Glycine max
Glyma.20G054400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 12569887-12571886 Glycine max
Glyma.20G054400 5.0kb upstream 5.0kb upstream 7117 true Chr20: 12562770-12569886 Glycine max
Glyma.20G054400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 12562770-12567769 Glycine max
Glyma.20G054400 5.0kb downstream 5.0kb downstream 7117 true Chr20: 12567770-12574886 Glycine max
Glyma.20G054400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 12569887-12574886 Glycine max
Glyma.20G054400 10.0kb upstream 10.0kb upstream 12117 true Chr20: 12557770-12569886 Glycine max
Glyma.20G054400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 12557770-12567769 Glycine max
Glyma.20G054400 10.0kb downstream 10.0kb downstream 12117 true Chr20: 12567770-12579886 Glycine max
Glyma.20G054400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 12569887-12579886 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122237966 5265 Fabidae Singleton cluster - no MSA
123983455 5270 Rosid Singleton cluster - no MSA
123748687 5271 Pentapetalae View MSA
122785799 5272 Eudicot View MSA
122044070 5273 Angiosperm View MSA
121347280 5274 Embryophyte View MSA
123426029 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.1356 0.0 67.4365 High  
cufflinks 19.8032 0.0 53.6548    
cufflinks 17.098 0.0 46.6054   Low
cufflinks 30.1254 0.0 80.4341 High  
cufflinks 24.547 0.0 65.9356 High  
cufflinks 22.8412 0.0 61.4798    
cufflinks 42.7216 0.0 114.151 High High
cufflinks 22.6698 0.0 61.0095 High  
cufflinks 25.7675 0.0 69.052 High  
cufflinks 12.34     High  
cufflinks 5.445       Low
cufflinks 10.536     High  
cufflinks 15.191     High High
cufflinks 19.011     High High
cufflinks 7.63     High  
cufflinks 7.732     High  
cufflinks 8.72     High  
cufflinks 12.924     High High
cufflinks 10.998     High  
cufflinks 7.413     High  
cufflinks 6.378     High Low
cufflinks 7.835     High  
cufflinks 9.882     High  
cufflinks 6.183     High Low
cufflinks 7.292     High  
cufflinks 7.17     High  

0 Strain