Gene : Glyma.20G099600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11946:SF89 - METHIONYL-TRNA SYNTHETASE Genomic Order:  996
Name:  ? Glyma.20G099600 Secondary Identifier:  ? PAC:30522420
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G099600 0.5kb upstream 0.5kb upstream 7892 true Chr20: 34295047-34302938 Glycine max
Glyma.20G099600 0.5kb upstream 0.5kb upstream 500 false Chr20: 34295047-34295546 Glycine max
Glyma.20G099600 0.5kb downstream 0.5kb downstream 7892 true Chr20: 34295547-34303438 Glycine max
Glyma.20G099600 0.5kb downstream 0.5kb downstream 500 false Chr20: 34302939-34303438 Glycine max
Glyma.20G099600 1.0kb upstream 1.0kb upstream 8392 true Chr20: 34294547-34302938 Glycine max
Glyma.20G099600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 34294547-34295546 Glycine max
Glyma.20G099600 1.0kb downstream 1.0kb downstream 8392 true Chr20: 34295547-34303938 Glycine max
Glyma.20G099600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 34302939-34303938 Glycine max
Glyma.20G099600 2.0kb upstream 2.0kb upstream 9392 true Chr20: 34293547-34302938 Glycine max
Glyma.20G099600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 34293547-34295546 Glycine max
Glyma.20G099600 2.0kb downstream 2.0kb downstream 9392 true Chr20: 34295547-34304938 Glycine max
Glyma.20G099600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 34302939-34304938 Glycine max
Glyma.20G099600 5.0kb upstream 5.0kb upstream 12392 true Chr20: 34290547-34302938 Glycine max
Glyma.20G099600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 34290547-34295546 Glycine max
Glyma.20G099600 5.0kb downstream 5.0kb downstream 12392 true Chr20: 34295547-34307938 Glycine max
Glyma.20G099600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 34302939-34307938 Glycine max
Glyma.20G099600 10.0kb upstream 10.0kb upstream 17392 true Chr20: 34285547-34302938 Glycine max
Glyma.20G099600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 34285547-34295546 Glycine max
Glyma.20G099600 10.0kb downstream 10.0kb downstream 17392 true Chr20: 34295547-34312938 Glycine max
Glyma.20G099600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 34302939-34312938 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303367 5265 Fabidae View MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.4475 0.0 35.8769   High
cufflinks 9.59656 0.0 25.7599    
cufflinks 4.70681 0.0 13.2408    
cufflinks 8.518 0.0 22.9661    
cufflinks 6.04197 0.0 16.6752    
cufflinks 3.43811 0.0 10.0756   Low
cufflinks 7.747 0.0 21.0081    
cufflinks 6.53502 0.0 17.8988    
cufflinks 5.0377 0.0 14.1224    
cufflinks 2.574        
cufflinks 0.353       Low
cufflinks 2.201        
cufflinks 1.539        
cufflinks 1.83        
cufflinks 1.457        
cufflinks 6.113       High
cufflinks 0.837        
cufflinks 2.609        
cufflinks 3.721        
cufflinks 6.642       High
cufflinks 0.629       Low
cufflinks 5.939       High
cufflinks 6.751       High
cufflinks 0.42       Low
cufflinks 6.285       High
cufflinks 0.657       Low

0 Strain