Gene : Glyma.20G084100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF380 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  841
Name:  ? Glyma.20G084100 Secondary Identifier:  ? PAC:30520638
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G084100 0.5kb upstream 0.5kb upstream 4123 true Chr20: 31588120-31592242 Glycine max
Glyma.20G084100 0.5kb upstream 0.5kb upstream 500 false Chr20: 31591743-31592242 Glycine max
Glyma.20G084100 0.5kb downstream 0.5kb downstream 4123 true Chr20: 31587620-31591742 Glycine max
Glyma.20G084100 0.5kb downstream 0.5kb downstream 500 false Chr20: 31587620-31588119 Glycine max
Glyma.20G084100 1.0kb upstream 1.0kb upstream 4623 true Chr20: 31588120-31592742 Glycine max
Glyma.20G084100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 31591743-31592742 Glycine max
Glyma.20G084100 1.0kb downstream 1.0kb downstream 4623 true Chr20: 31587120-31591742 Glycine max
Glyma.20G084100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 31587120-31588119 Glycine max
Glyma.20G084100 2.0kb upstream 2.0kb upstream 5623 true Chr20: 31588120-31593742 Glycine max
Glyma.20G084100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 31591743-31593742 Glycine max
Glyma.20G084100 2.0kb downstream 2.0kb downstream 5623 true Chr20: 31586120-31591742 Glycine max
Glyma.20G084100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 31586120-31588119 Glycine max
Glyma.20G084100 5.0kb upstream 5.0kb upstream 8623 true Chr20: 31588120-31596742 Glycine max
Glyma.20G084100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 31591743-31596742 Glycine max
Glyma.20G084100 5.0kb downstream 5.0kb downstream 8623 true Chr20: 31583120-31591742 Glycine max
Glyma.20G084100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 31583120-31588119 Glycine max
Glyma.20G084100 10.0kb upstream 10.0kb upstream 13623 true Chr20: 31588120-31601742 Glycine max
Glyma.20G084100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 31591743-31601742 Glycine max
Glyma.20G084100 10.0kb downstream 10.0kb downstream 13623 true Chr20: 31578120-31591742 Glycine max
Glyma.20G084100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 31578120-31588119 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303934 5265 Fabidae View MSA
124068399 5270 Rosid View MSA
123739608 5271 Pentapetalae View MSA
122792397 5272 Eudicot View MSA
122043324 5273 Angiosperm View MSA
121346107 5274 Embryophyte View MSA
123380332 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.76859 0.0 18.0857   High
cufflinks 4.55583 0.0 12.3698    
cufflinks 3.96814 0.0 10.8649   Low
cufflinks 6.58346 0.0 17.604    
cufflinks 4.50393 0.0 12.2147    
cufflinks 4.05993 0.0 11.0824    
cufflinks 7.19801 0.0 19.2163   High
cufflinks 6.22081 0.0 16.6615    
cufflinks 4.02851 0.0 11.0136   Low
cufflinks 5.26        
cufflinks 2.913       Low
cufflinks 5.438        
cufflinks 3.988        
cufflinks 4.336        
cufflinks 2.217       Low
cufflinks 5.62        
cufflinks 6.368     High  
cufflinks 5.73        
cufflinks 5.792        
cufflinks 6.231        
cufflinks 2.259       Low
cufflinks 6.531       High
cufflinks 6.29        
cufflinks 2.933       Low
cufflinks 5.781        
cufflinks 2.921       Low

0 Strain