Gene : Glyma.20G087200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31100:SF3 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 19-RELATED Genomic Order:  872
Name:  ? Glyma.20G087200 Secondary Identifier:  ? PAC:30519776
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G087200 0.5kb upstream 0.5kb upstream 2740 true Chr20: 32632218-32634957 Glycine max
Glyma.20G087200 0.5kb upstream 0.5kb upstream 500 false Chr20: 32634458-32634957 Glycine max
Glyma.20G087200 0.5kb downstream 0.5kb downstream 2740 true Chr20: 32631718-32634457 Glycine max
Glyma.20G087200 0.5kb downstream 0.5kb downstream 500 false Chr20: 32631718-32632217 Glycine max
Glyma.20G087200 1.0kb upstream 1.0kb upstream 3240 true Chr20: 32632218-32635457 Glycine max
Glyma.20G087200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 32634458-32635457 Glycine max
Glyma.20G087200 1.0kb downstream 1.0kb downstream 3240 true Chr20: 32631218-32634457 Glycine max
Glyma.20G087200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 32631218-32632217 Glycine max
Glyma.20G087200 2.0kb upstream 2.0kb upstream 4240 true Chr20: 32632218-32636457 Glycine max
Glyma.20G087200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 32634458-32636457 Glycine max
Glyma.20G087200 2.0kb downstream 2.0kb downstream 4240 true Chr20: 32630218-32634457 Glycine max
Glyma.20G087200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 32630218-32632217 Glycine max
Glyma.20G087200 5.0kb upstream 5.0kb upstream 7240 true Chr20: 32632218-32639457 Glycine max
Glyma.20G087200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 32634458-32639457 Glycine max
Glyma.20G087200 5.0kb downstream 5.0kb downstream 7240 true Chr20: 32627218-32634457 Glycine max
Glyma.20G087200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 32627218-32632217 Glycine max
Glyma.20G087200 10.0kb upstream 10.0kb upstream 12240 true Chr20: 32632218-32644457 Glycine max
Glyma.20G087200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 32634458-32644457 Glycine max
Glyma.20G087200 10.0kb downstream 10.0kb downstream 12240 true Chr20: 32622218-32634457 Glycine max
Glyma.20G087200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 32622218-32632217 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238360 5265 Fabidae Singleton cluster - no MSA
124071129 5270 Rosid View MSA
123751689 5271 Pentapetalae View MSA
122796160 5272 Eudicot View MSA
122048201 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0512504 0.0 0.206677 Low  
cufflinks 0.0100725 0.0 0.0456792 Low Low
cufflinks 0.104164 0.0 0.409165 Low  
cufflinks 0.703224 0.0 2.51709    
cufflinks 10.6452 0.0 28.5563    
cufflinks 24.7155 0.0 66.8517 High High
cufflinks 0.106137 0.0 0.416371 Low  
cufflinks 4.229 0.0 12.2096    
cufflinks 12.9883 0.0 34.6833   High
cufflinks 0.272        
cufflinks 2.876        
cufflinks 0.068     Low  
cufflinks 5.144       High
cufflinks 1.665        
cufflinks 0.754        
cufflinks 0.043     Low  
cufflinks 4.37       High
cufflinks 0.011     Low Low
cufflinks 0.014     Low Low
cufflinks 0.008     Low Low
cufflinks 3.484        
cufflinks 0.025     Low  
cufflinks 0.015     Low Low
cufflinks 6.546     High High
cufflinks 0.026     Low  
cufflinks 5.77       High

0 Strain