Gene : Glyma.20G087700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31371:SF2 - GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K14B15 Genomic Order:  877
Name:  ? Glyma.20G087700 Secondary Identifier:  ? PAC:30520799
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G087700 0.5kb upstream 0.5kb upstream 4232 true Chr20: 32765127-32769358 Glycine max
Glyma.20G087700 0.5kb upstream 0.5kb upstream 500 false Chr20: 32768859-32769358 Glycine max
Glyma.20G087700 0.5kb downstream 0.5kb downstream 4232 true Chr20: 32764627-32768858 Glycine max
Glyma.20G087700 0.5kb downstream 0.5kb downstream 500 false Chr20: 32764627-32765126 Glycine max
Glyma.20G087700 1.0kb upstream 1.0kb upstream 4732 true Chr20: 32765127-32769858 Glycine max
Glyma.20G087700 1.0kb upstream 1.0kb upstream 1000 false Chr20: 32768859-32769858 Glycine max
Glyma.20G087700 1.0kb downstream 1.0kb downstream 4732 true Chr20: 32764127-32768858 Glycine max
Glyma.20G087700 1.0kb downstream 1.0kb downstream 1000 false Chr20: 32764127-32765126 Glycine max
Glyma.20G087700 2.0kb upstream 2.0kb upstream 5732 true Chr20: 32765127-32770858 Glycine max
Glyma.20G087700 2.0kb upstream 2.0kb upstream 2000 false Chr20: 32768859-32770858 Glycine max
Glyma.20G087700 2.0kb downstream 2.0kb downstream 5732 true Chr20: 32763127-32768858 Glycine max
Glyma.20G087700 2.0kb downstream 2.0kb downstream 2000 false Chr20: 32763127-32765126 Glycine max
Glyma.20G087700 5.0kb upstream 5.0kb upstream 8732 true Chr20: 32765127-32773858 Glycine max
Glyma.20G087700 5.0kb upstream 5.0kb upstream 5000 false Chr20: 32768859-32773858 Glycine max
Glyma.20G087700 5.0kb downstream 5.0kb downstream 8732 true Chr20: 32760127-32768858 Glycine max
Glyma.20G087700 5.0kb downstream 5.0kb downstream 5000 false Chr20: 32760127-32765126 Glycine max
Glyma.20G087700 10.0kb upstream 10.0kb upstream 13732 true Chr20: 32765127-32778858 Glycine max
Glyma.20G087700 10.0kb upstream 10.0kb upstream 10000 false Chr20: 32768859-32778858 Glycine max
Glyma.20G087700 10.0kb downstream 10.0kb downstream 13732 true Chr20: 32755127-32768858 Glycine max
Glyma.20G087700 10.0kb downstream 10.0kb downstream 10000 false Chr20: 32755127-32765126 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303759 5265 Fabidae View MSA
124066991 5270 Rosid View MSA
123748121 5271 Pentapetalae View MSA
122787912 5272 Eudicot View MSA
122049619 5273 Angiosperm View MSA
121344351 5274 Embryophyte View MSA
123380027 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.70603 0.0 10.2807    
cufflinks 3.82524 0.0 10.5714    
cufflinks 5.96428 0.0 16.0146   High
cufflinks 1.57131 0.0 4.83135   Low
cufflinks 2.9128 0.0 8.29029    
cufflinks 1.74772 0.0 5.29595    
cufflinks 1.46021 0.0 4.55951   Low
cufflinks 2.4972 0.0 7.21811    
cufflinks 4.73478 0.0 12.8831   High
cufflinks 1.542        
cufflinks 1.007       Low
cufflinks 3.949        
cufflinks 2.715        
cufflinks 1.622        
cufflinks 2.251        
cufflinks 6.553       High
cufflinks 0.555       Low
cufflinks 3.629        
cufflinks 6.319       High
cufflinks 6.187       High
cufflinks 1.135       Low
cufflinks 6.893       High
cufflinks 5.488        
cufflinks 2.012        
cufflinks 5.367        
cufflinks 0.909       Low

0 Strain