Gene : Glyma.20G088200 G. max Wm82.a2.v1
Defline:  (1 of 9) PF05514 - HR-like lesion-inducing (HR_lesion) Genomic Order:  882
Name:  ? Glyma.20G088200 Secondary Identifier:  ? PAC:30519841
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G088200 0.5kb upstream 0.5kb upstream 3080 true Chr20: 32938348-32941427 Glycine max
Glyma.20G088200 0.5kb upstream 0.5kb upstream 500 false Chr20: 32940928-32941427 Glycine max
Glyma.20G088200 0.5kb downstream 0.5kb downstream 3080 true Chr20: 32937848-32940927 Glycine max
Glyma.20G088200 0.5kb downstream 0.5kb downstream 500 false Chr20: 32937848-32938347 Glycine max
Glyma.20G088200 1.0kb upstream 1.0kb upstream 3580 true Chr20: 32938348-32941927 Glycine max
Glyma.20G088200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 32940928-32941927 Glycine max
Glyma.20G088200 1.0kb downstream 1.0kb downstream 3580 true Chr20: 32937348-32940927 Glycine max
Glyma.20G088200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 32937348-32938347 Glycine max
Glyma.20G088200 2.0kb upstream 2.0kb upstream 4580 true Chr20: 32938348-32942927 Glycine max
Glyma.20G088200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 32940928-32942927 Glycine max
Glyma.20G088200 2.0kb downstream 2.0kb downstream 4580 true Chr20: 32936348-32940927 Glycine max
Glyma.20G088200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 32936348-32938347 Glycine max
Glyma.20G088200 5.0kb upstream 5.0kb upstream 7580 true Chr20: 32938348-32945927 Glycine max
Glyma.20G088200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 32940928-32945927 Glycine max
Glyma.20G088200 5.0kb downstream 5.0kb downstream 7580 true Chr20: 32933348-32940927 Glycine max
Glyma.20G088200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 32933348-32938347 Glycine max
Glyma.20G088200 10.0kb upstream 10.0kb upstream 12580 true Chr20: 32938348-32950927 Glycine max
Glyma.20G088200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 32940928-32950927 Glycine max
Glyma.20G088200 10.0kb downstream 10.0kb downstream 12580 true Chr20: 32928348-32940927 Glycine max
Glyma.20G088200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 32928348-32938347 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306907 5265 Fabidae View MSA
124068241 5270 Rosid View MSA
123750516 5271 Pentapetalae View MSA
122797406 5272 Eudicot View MSA
122050658 5273 Angiosperm View MSA
121351347 5274 Embryophyte View MSA
123426506 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3246 0.0 49.291   Low
cufflinks 106.755 0.0 476.915 High  
cufflinks 27.2834 0.0 82.1428 High Low
cufflinks 59.9573 0.0 236.653 High  
cufflinks 115.793 0.0 525.326 High  
cufflinks 86.5968 0.0 320.013 High  
cufflinks 237.29 0.0 1207.01 High High
cufflinks 64.9604 0.0 260.646 High  
cufflinks 66.514 0.0 239.411 High  
cufflinks 9.037     High  
cufflinks 4.062        
cufflinks 4.509        
cufflinks 13.287     High High
cufflinks 19.783     High High
cufflinks 2.929       Low
cufflinks 5.113        
cufflinks 4.579        
cufflinks 6.742        
cufflinks 13.032     High High
cufflinks 3.766        
cufflinks 4.343        
cufflinks 4.512        
cufflinks 5.844        
cufflinks 3.808        
cufflinks 4.213        
cufflinks 4.883        

0 Strain