Gene : Glyma.20G078900 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10383:SF23 - SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN Genomic Order:  789
Name:  ? Glyma.20G078900 Secondary Identifier:  ? PAC:30523019
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G078900 0.5kb upstream 0.5kb upstream 8242 true Chr20: 29364270-29372511 Glycine max
Glyma.20G078900 0.5kb upstream 0.5kb upstream 500 false Chr20: 29372012-29372511 Glycine max
Glyma.20G078900 0.5kb downstream 0.5kb downstream 8242 true Chr20: 29363770-29372011 Glycine max
Glyma.20G078900 0.5kb downstream 0.5kb downstream 500 false Chr20: 29363770-29364269 Glycine max
Glyma.20G078900 1.0kb upstream 1.0kb upstream 8742 true Chr20: 29364270-29373011 Glycine max
Glyma.20G078900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 29372012-29373011 Glycine max
Glyma.20G078900 1.0kb downstream 1.0kb downstream 8742 true Chr20: 29363270-29372011 Glycine max
Glyma.20G078900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 29363270-29364269 Glycine max
Glyma.20G078900 2.0kb upstream 2.0kb upstream 9742 true Chr20: 29364270-29374011 Glycine max
Glyma.20G078900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 29372012-29374011 Glycine max
Glyma.20G078900 2.0kb downstream 2.0kb downstream 9742 true Chr20: 29362270-29372011 Glycine max
Glyma.20G078900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 29362270-29364269 Glycine max
Glyma.20G078900 5.0kb upstream 5.0kb upstream 12742 true Chr20: 29364270-29377011 Glycine max
Glyma.20G078900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 29372012-29377011 Glycine max
Glyma.20G078900 5.0kb downstream 5.0kb downstream 12742 true Chr20: 29359270-29372011 Glycine max
Glyma.20G078900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 29359270-29364269 Glycine max
Glyma.20G078900 10.0kb upstream 10.0kb upstream 17742 true Chr20: 29364270-29382011 Glycine max
Glyma.20G078900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 29372012-29382011 Glycine max
Glyma.20G078900 10.0kb downstream 10.0kb downstream 17742 true Chr20: 29354270-29372011 Glycine max
Glyma.20G078900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 29354270-29364269 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305261 5265 Fabidae View MSA
124063610 5270 Rosid View MSA
123751443 5271 Pentapetalae View MSA
122793725 5272 Eudicot View MSA
122046221 5273 Angiosperm View MSA
121344586 5274 Embryophyte View MSA
123424460 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0193089 0.0 0.0997306 Low Low
cufflinks 0.0901008 0.0 0.7471 Low  
cufflinks 0.0351329 0.0 0.160757 Low Low
cufflinks 0.381189 0.0 2.88368    
cufflinks 0.276967 0.0 1.95529    
cufflinks 0.309393 0.0 2.05989    
cufflinks 1.02828 0.0 7.70202   High
cufflinks 0.546536 0.0 4.32471    
cufflinks 0.919814 0.0 8.34251   High
cufflinks 0.003     Low  
cufflinks 0.01     Low  
cufflinks 0.002     Low  
cufflinks 0.014     Low  
cufflinks 0.01     Low  
cufflinks 0.003     Low  
cufflinks 0.001     Low Low
cufflinks 0.053     Low High
cufflinks 0.004     Low  
cufflinks 0.005     Low  
cufflinks 0.001     Low Low
cufflinks 0.016     Low High
cufflinks 0.001     Low Low
cufflinks 0.002     Low  
cufflinks 0.009     Low  
cufflinks 0.001     Low Low
cufflinks 0.024     Low High

0 Strain