Gene : Glyma.20G079100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10333 - INHIBITOR OF GROWTH PROTEIN Genomic Order:  791
Name:  ? Glyma.20G079100 Secondary Identifier:  ? PAC:30520050
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G079100 0.5kb upstream 0.5kb upstream 14171 true Chr20: 29399347-29413517 Glycine max
Glyma.20G079100 0.5kb upstream 0.5kb upstream 500 false Chr20: 29399347-29399846 Glycine max
Glyma.20G079100 0.5kb downstream 0.5kb downstream 14171 true Chr20: 29399847-29414017 Glycine max
Glyma.20G079100 0.5kb downstream 0.5kb downstream 500 false Chr20: 29413518-29414017 Glycine max
Glyma.20G079100 1.0kb upstream 1.0kb upstream 14671 true Chr20: 29398847-29413517 Glycine max
Glyma.20G079100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 29398847-29399846 Glycine max
Glyma.20G079100 1.0kb downstream 1.0kb downstream 14671 true Chr20: 29399847-29414517 Glycine max
Glyma.20G079100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 29413518-29414517 Glycine max
Glyma.20G079100 2.0kb upstream 2.0kb upstream 15671 true Chr20: 29397847-29413517 Glycine max
Glyma.20G079100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 29397847-29399846 Glycine max
Glyma.20G079100 2.0kb downstream 2.0kb downstream 15671 true Chr20: 29399847-29415517 Glycine max
Glyma.20G079100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 29413518-29415517 Glycine max
Glyma.20G079100 5.0kb upstream 5.0kb upstream 18671 true Chr20: 29394847-29413517 Glycine max
Glyma.20G079100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 29394847-29399846 Glycine max
Glyma.20G079100 5.0kb downstream 5.0kb downstream 18671 true Chr20: 29399847-29418517 Glycine max
Glyma.20G079100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 29413518-29418517 Glycine max
Glyma.20G079100 10.0kb upstream 10.0kb upstream 23671 true Chr20: 29389847-29413517 Glycine max
Glyma.20G079100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 29389847-29399846 Glycine max
Glyma.20G079100 10.0kb downstream 10.0kb downstream 23671 true Chr20: 29399847-29423517 Glycine max
Glyma.20G079100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 29413518-29423517 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238313 5265 Fabidae Singleton cluster - no MSA
123983758 5270 Rosid Singleton cluster - no MSA
123742786 5271 Pentapetalae View MSA
122789662 5272 Eudicot View MSA
122046688 5273 Angiosperm View MSA
121343863 5274 Embryophyte View MSA
123426604 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.64733 0.0 17.0799    
cufflinks 7.79841 0.0 27.3307   High
cufflinks 6.19902 0.0 23.0255    
cufflinks 7.02349 0.0 25.2405    
cufflinks 4.1381 0.0 13.5982   Low
cufflinks 5.2469 0.0 15.9794    
cufflinks 5.79912 0.0 17.548    
cufflinks 8.75724 0.0 29.9641   High
cufflinks 5.49213 0.0 16.6748    
cufflinks 0.538        
cufflinks 0.565        
cufflinks 0.591        
cufflinks 0.531        
cufflinks 0.482        
cufflinks 0.724        
cufflinks 0.779        
cufflinks 0.304       Low
cufflinks 0.732        
cufflinks 0.721        
cufflinks 0.777        
cufflinks 0.441       Low
cufflinks 0.805       High
cufflinks 0.694        
cufflinks 0.587        
cufflinks 0.787       High
cufflinks 0.463        

0 Strain