Gene : Glyma.20G113500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12385:SF36 - PLASMA-MEMBRANE CHOLINE TRANSPORTER-LIKE PROTEIN Genomic Order:  1135
Name:  ? Glyma.20G113500 Secondary Identifier:  ? PAC:30521182
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G113500 0.5kb upstream 0.5kb upstream 4997 true Chr20: 35548001-35552997 Glycine max
Glyma.20G113500 0.5kb upstream 0.5kb upstream 500 false Chr20: 35548001-35548500 Glycine max
Glyma.20G113500 0.5kb downstream 0.5kb downstream 4997 true Chr20: 35548501-35553497 Glycine max
Glyma.20G113500 0.5kb downstream 0.5kb downstream 500 false Chr20: 35552998-35553497 Glycine max
Glyma.20G113500 1.0kb upstream 1.0kb upstream 5497 true Chr20: 35547501-35552997 Glycine max
Glyma.20G113500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 35547501-35548500 Glycine max
Glyma.20G113500 1.0kb downstream 1.0kb downstream 5497 true Chr20: 35548501-35553997 Glycine max
Glyma.20G113500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 35552998-35553997 Glycine max
Glyma.20G113500 2.0kb upstream 2.0kb upstream 6497 true Chr20: 35546501-35552997 Glycine max
Glyma.20G113500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 35546501-35548500 Glycine max
Glyma.20G113500 2.0kb downstream 2.0kb downstream 6497 true Chr20: 35548501-35554997 Glycine max
Glyma.20G113500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 35552998-35554997 Glycine max
Glyma.20G113500 5.0kb upstream 5.0kb upstream 9497 true Chr20: 35543501-35552997 Glycine max
Glyma.20G113500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 35543501-35548500 Glycine max
Glyma.20G113500 5.0kb downstream 5.0kb downstream 9497 true Chr20: 35548501-35557997 Glycine max
Glyma.20G113500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 35552998-35557997 Glycine max
Glyma.20G113500 10.0kb upstream 10.0kb upstream 14497 true Chr20: 35538501-35552997 Glycine max
Glyma.20G113500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 35538501-35548500 Glycine max
Glyma.20G113500 10.0kb downstream 10.0kb downstream 14497 true Chr20: 35548501-35562997 Glycine max
Glyma.20G113500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 35552998-35562997 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301299 5265 Fabidae View MSA
124063041 5270 Rosid View MSA
123736673 5271 Pentapetalae View MSA
122792379 5272 Eudicot View MSA
122042832 5273 Angiosperm View MSA
121344178 5274 Embryophyte View MSA
123428325 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.60455 0.0 13.3996   High
cufflinks 1.96663 0.0 6.45448    
cufflinks 1.4804 0.0 5.00823    
cufflinks 1.06006 0.0 3.71913   Low
cufflinks 1.8489 0.0 6.11341    
cufflinks 5.17501 0.0 14.8263   High
cufflinks 1.03752 0.0 3.6477   Low
cufflinks 1.31912 0.0 4.54376    
cufflinks 1.87451 0.0 6.17828    
cufflinks 1.818        
cufflinks 4.523       High
cufflinks 1.389        
cufflinks 1.404        
cufflinks 1.274        
cufflinks 0.715       Low
cufflinks 2.202        
cufflinks 3.654        
cufflinks 1.424        
cufflinks 1.435        
cufflinks 1.512        
cufflinks 4.481       High
cufflinks 2.02        
cufflinks 1.976        
cufflinks 6.359     High High
cufflinks 1.624        
cufflinks 7.213     High High

0 Strain