Gene : Glyma.20G115000 G. max Wm82.a2.v1
Defline:  (1 of 9) PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1150
Name:  ? Glyma.20G115000 Secondary Identifier:  ? PAC:30522623
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G115000 0.5kb upstream 0.5kb upstream 2693 true Chr20: 35682452-35685144 Glycine max
Glyma.20G115000 0.5kb upstream 0.5kb upstream 500 false Chr20: 35684645-35685144 Glycine max
Glyma.20G115000 0.5kb downstream 0.5kb downstream 2693 true Chr20: 35681952-35684644 Glycine max
Glyma.20G115000 0.5kb downstream 0.5kb downstream 500 false Chr20: 35681952-35682451 Glycine max
Glyma.20G115000 1.0kb upstream 1.0kb upstream 3193 true Chr20: 35682452-35685644 Glycine max
Glyma.20G115000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 35684645-35685644 Glycine max
Glyma.20G115000 1.0kb downstream 1.0kb downstream 3193 true Chr20: 35681452-35684644 Glycine max
Glyma.20G115000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 35681452-35682451 Glycine max
Glyma.20G115000 2.0kb upstream 2.0kb upstream 4193 true Chr20: 35682452-35686644 Glycine max
Glyma.20G115000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 35684645-35686644 Glycine max
Glyma.20G115000 2.0kb downstream 2.0kb downstream 4193 true Chr20: 35680452-35684644 Glycine max
Glyma.20G115000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 35680452-35682451 Glycine max
Glyma.20G115000 5.0kb upstream 5.0kb upstream 7193 true Chr20: 35682452-35689644 Glycine max
Glyma.20G115000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 35684645-35689644 Glycine max
Glyma.20G115000 5.0kb downstream 5.0kb downstream 7193 true Chr20: 35677452-35684644 Glycine max
Glyma.20G115000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 35677452-35682451 Glycine max
Glyma.20G115000 10.0kb upstream 10.0kb upstream 12193 true Chr20: 35682452-35694644 Glycine max
Glyma.20G115000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 35684645-35694644 Glycine max
Glyma.20G115000 10.0kb downstream 10.0kb downstream 12193 true Chr20: 35672452-35684644 Glycine max
Glyma.20G115000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 35672452-35682451 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307122 5265 Fabidae View MSA
124068805 5270 Rosid View MSA
123753317 5271 Pentapetalae View MSA
122792715 5272 Eudicot View MSA
122046595 5273 Angiosperm View MSA
121310630 5274 Embryophyte View MSA
123348065 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33366 0.0 4.47757   High
cufflinks 0.660082 0.0 2.36795    
cufflinks 1.80975 0.0 5.84276   High
cufflinks 0.926134 0.0 3.23427    
cufflinks 0.764627 0.0 2.7072    
cufflinks 0.466303 0.0 1.70694   Low
cufflinks 0.894173 0.0 3.12134    
cufflinks 0.848663 0.0 2.98445    
cufflinks 0.892565 0.0 3.12426    
cufflinks 0.29       Low
cufflinks 0.471        
cufflinks 0.715       High
cufflinks 0.296       Low
cufflinks 0.564        
cufflinks 0.235       Low
cufflinks 0.557        
cufflinks 0.276       Low
cufflinks 0.391        
cufflinks 0.516        
cufflinks 0.72       High
cufflinks 0.345        
cufflinks 0.66       High
cufflinks 0.5        
cufflinks 0.453        
cufflinks 0.599        
cufflinks 0.301       Low

0 Strain