Gene : Glyma.20G117100 G. max Wm82.a2.v1
Defline:  (1 of 4) 6.1.1.18 - Glutamine--tRNA ligase / Glutaminyl-tRNA synthetase Genomic Order:  1171
Name:  ? Glyma.20G117100 Secondary Identifier:  ? PAC:30520821
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G117100 0.5kb upstream 0.5kb upstream 10115 true Chr20: 35974639-35984753 Glycine max
Glyma.20G117100 0.5kb upstream 0.5kb upstream 500 false Chr20: 35984254-35984753 Glycine max
Glyma.20G117100 0.5kb downstream 0.5kb downstream 10115 true Chr20: 35974139-35984253 Glycine max
Glyma.20G117100 0.5kb downstream 0.5kb downstream 500 false Chr20: 35974139-35974638 Glycine max
Glyma.20G117100 1.0kb upstream 1.0kb upstream 10615 true Chr20: 35974639-35985253 Glycine max
Glyma.20G117100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 35984254-35985253 Glycine max
Glyma.20G117100 1.0kb downstream 1.0kb downstream 10615 true Chr20: 35973639-35984253 Glycine max
Glyma.20G117100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 35973639-35974638 Glycine max
Glyma.20G117100 2.0kb upstream 2.0kb upstream 11615 true Chr20: 35974639-35986253 Glycine max
Glyma.20G117100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 35984254-35986253 Glycine max
Glyma.20G117100 2.0kb downstream 2.0kb downstream 11615 true Chr20: 35972639-35984253 Glycine max
Glyma.20G117100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 35972639-35974638 Glycine max
Glyma.20G117100 5.0kb upstream 5.0kb upstream 14615 true Chr20: 35974639-35989253 Glycine max
Glyma.20G117100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 35984254-35989253 Glycine max
Glyma.20G117100 5.0kb downstream 5.0kb downstream 14615 true Chr20: 35969639-35984253 Glycine max
Glyma.20G117100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 35969639-35974638 Glycine max
Glyma.20G117100 10.0kb upstream 10.0kb upstream 19615 true Chr20: 35974639-35994253 Glycine max
Glyma.20G117100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 35984254-35994253 Glycine max
Glyma.20G117100 10.0kb downstream 10.0kb downstream 19615 true Chr20: 35964639-35984253 Glycine max
Glyma.20G117100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 35964639-35974638 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238215 5265 Fabidae Singleton cluster - no MSA
123983670 5270 Rosid Singleton cluster - no MSA
123744952 5271 Pentapetalae View MSA
122789610 5272 Eudicot View MSA
122046880 5273 Angiosperm View MSA
121346731 5274 Embryophyte View MSA
123424701 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.3472 0.0 137.711 High  
cufflinks 20.2116 0.0 70.9203 High Low
cufflinks 26.876 0.0 98.3415 High  
cufflinks 28.3323 0.0 96.7911 High  
cufflinks 29.7713 0.0 103.53 High  
cufflinks 15.305 0.0 52.5663   Low
cufflinks 50.4246 0.0 203.865 High High
cufflinks 29.0178 0.0 108.235 High  
cufflinks 34.9083 0.0 125.771 High  
cufflinks 2.927       Low
cufflinks 14.507     High High
cufflinks 3.902        
cufflinks 4.263        
cufflinks 5.377        
cufflinks 10.032     High High
cufflinks 3.362        
cufflinks 4.361        
cufflinks 4.338        
cufflinks 3.517        
cufflinks 2.978        
cufflinks 10.4     High High
cufflinks 3.36        
cufflinks 3.321        
cufflinks 6.675     High  
cufflinks 3.283        
cufflinks 5.393        

0 Strain